Antisense modulation of fibroblast growth factor receptor 4 expression

ABSTRACT

Antisense compounds, compositions and methods are provided for modulating the expression of fibroblast growth factor receptor 4 (FGFR4). The compositions comprise antisense compounds, particularly antisense oligonucleotides, targeted to nucleic acids encoding fibroblast growth factor receptor 4. Methods of using these compounds for modulation of fibroblast growth factor receptor 4 expression and for treatment of diseases associated with expression of fibroblast growth factor receptor 4 are provided.

FIELD OF THE INVENTION

The present invention provides compositions and methods for modulating the expression of fibroblast growth factor receptor 4. In particular, this invention relates to compounds, particularly oligonucleotides, specifically hybridizable with nucleic acids encoding fibroblast growth factor receptor 4. Such compounds have been shown to modulate the expression of fibroblast growth factor receptor 4 (FGFR4).

BACKGROUND OF THE INVENTION

Obesity is considered a long-term metabolic disease. There are several serious medical sequelae related to obesity. There are over 1 billion overweight individuals worldwide with 100 million clinically obese. The increasing health care costs of treating obesity related diseases in the US alone are estimated at over $100 billion annually. Current methods for treating obesity include behavioral modification, diet, surgery (gastroplasty), administering pharmaceutical agents that block appetite stimulating signals or absorption of nutrients (fat), and administering agents that increase thermogenesis or fat metabolism. Some of these methods have disadvantages in that they rely on patient resolve, are invasive, or have unwanted side effects. An understanding of the mechanisms by which obesity is regulated may provide important therapeutic information.

Obesity is frequently associated with insulin resistance and together constitutes risk factors for later development of type 2 diabetes and cardiovascular diseases. Insulin resistance occurs well before development of type 2 diabetes, and insulin is overproduced to compensate for the insulin resistance and to maintain normal glucose levels. Type 2 diabetes ensues, as the pancreas can no longer produce enough insulin to maintain normal glucose levels. Early stages of type 2 diabetes are associated with elevated levels of insulin but as the disease progresses the pancreas may fail to produce insulin, resulting in increased blood glucose levels. Diabetes is a significant risk factor for both heart disease and stroke and is the leading cause of blindness and end-stage renal failure.

Diabetes is a disorder characterized by hyperglycemia due to deficient insulin action that may result from reduced insulin production or insulin resistance or both. Diabetes mellitus is a polygenic disorder affecting a significant portion of the people in the world. It is divided into two types. In type I diabetes, or insulin-dependent diabetes mellitus (IDDM), patients produce little or no insulin, the hormone that regulates glucose utilization. In type 2 diabetes, or noninsulin-dependent diabetes mellitus (NIDDM), patients often have plasma insulin levels that are the same compared to nondiabetic humans; however, these patients have developed a resistance to the insulin stimulating effect of glucose and lipid metabolism in the main insulin-sensitive tissues, i.e., muscle, liver and adipose tissues, and the plasma insulin levels are insufficient to overcome the pronounced insulin resistance. Additionally, glucotoxicity, which results from long-term hyperglycemia, induces tissue-dependent insulin resistance (Nawano et al., Am. J. Physiol. Endocrinol. Metab., 278, E535-543) exacerbating the disease.

Type 2 diabetes accounts for over 90% of all diabetes cases. It is a metabolic disorder characterized by hyperglycemia leading to secondary complications such as neuropathy, nephropathy, retinopathy, hypertriglyceridemia, obesity, and other cardiovascular diseases generally referred to as metabolic syndrome.

Metabolic syndrome is a combination of medical disorders that increase one's risk for cardiovascular disease and diabetes. The symptoms, including high blood pressure, high triglycerides, decreased HDL and obesity, tend to appear together in some individuals. Metabolic syndrome is known under various other names, such as (metabolic) syndrome X, insulin resistance syndrome or Reaven's syndrome.

Diabetes and obesity (sometimes now collectively referred to as “diabesity”) are interrelated in that obesity is known to exacerbate the pathology of diabetes and greater than 60% of diabetics are obese. Most human obesity is associated with insulin resistance and leptin resistance. In fact, it has been suggested that obesity may have an even greater impact on insulin action than diabetes itself (Sindelka et al., Physiol Res., 51, 85-91). Additionally, several compounds on the market for the treatment of diabetes are known to induce weight gain, a very undesirable side effect to the treatment of this disease. Therefore, a compound that has the potential to treat both diabetes and obesity would provide a significant improvement over current treatments.

The fibroblast growth factor (FGF) family of signaling polypeptides regulates a diverse array of physiologic functions including mitogenesis, wound healing, cell differentiation and angiogenesis, and development. Both normal and malignant cell growth as well as proliferation are affected by changes in local concentration of these extracellular signaling molecules, which act as autocrine as well as paracrine factors. Autocrine FGF signaling may be particularly important in the progression of steroid hormone-dependent cancers and to a hormone independent state (Powers et al., Endocr. Relat. Cancer, 7, 165-197). FGFs and their receptors are expressed at increased levels in several tissues and cell lines and overexpression is believed to contribute to the malignant phenotype. Furthermore, a number of oncogenes are homologues of genes encoding growth factor receptors, and there is a potential for aberrant activation of FGF-dependent signaling in human pancreatic cancer (Ozawa et al., Teratog. Carcinog. Mutagen., 21, 27-44).

Fibroblast growth factors (FGFs) and their receptors (FGFRs) are critical for the development of most cell types. The cellular response to FGFs is transmitted via four types of high affinity transmembrane tyrosine-kinase fibroblast growth factor receptors numbered 1 to 4 (FGFR1 to FGFR4). There are at least 22 distinct FGF ligands and, as indicated above, four receptors (FGFR1-4). Different ligand/receptor pairs regulate cell growth in either a positive or negative manner, depending on the cell type and stage of development (Dailey et al., Cytokine Growth Factor Rev. 16, 233-247; Eswarakumar et al. Cytokine Growth Factor Rev., 16, 139-149) Upon ligand binding, the receptors dimerize and auto- or trans-phosphorylate specific cytoplasmic tyrosine residues to transmit an intracellular signal that ultimately reaches nuclear transcription factor effectors. Mitogenic signaling by these FGFRs is subsequently mediated via a number of pathways, including the ras/raf/MAP kinase cascade (Ozawa et al., Teratog. Carcinog. Mutagen., 21, 27-44).

Alternative splicing of the mRNA for the FGFRs 1, 2, 3 and 4 results in a wide range of receptor isoforms with varying ligand-binding properties and specificities. (Klagsbrun et al., Cell, 67, 229-231; Jaye et al., Biochim Biophys acta, 1135, 185-199). With different receptor possibilities and at least 22 ligands in the FGF family, there is a great deal of diversity in the FGF signaling pathway (Powers et al., Endocr. Relat. Cancer, 7, 165-197). Furthermore, expression and localization of the receptor isoforms is regulated in a tissue specific manner. Thus, the various FGFs may exert different influences upon different cell types by interacting with different receptor splice variants to initiate unique intracellular signaling cascades, leading to a panoply of cellular responses (Ozawa et al., Teratog. Carcinog. Mutagen., 21, 27-44).

Fibroblast growth factor receptor 4 (also known as FGF receptor-4, TKF; tyrosine kinase related to fibroblast growth factor receptor; hydroxyaryl-protein kinase; tyrosylprotein kinase; Fgfr4; FGFR-4; FGFR4; CD334, FGFR4_HUMAN and JTK2) has high affinity for the acidic and/or basic fibroblast growth factors. (Armstrong et al., Genes Chromosomes Cancer, 4, 94-98).

The FGFR4 gene was mapped to 5q35.1-qter, the long (q) arm of chromosome 5 between position 35.1 and the end (terminus) of the arm, an area involved in leukemias and lymphomas. (Armstrong et al., Genes Chromosomes Cancer, 4, 94-98). More precisely, the FGFR4 gene is located from base pair 176,446,526 to base pair 176,457,732 on chromosome 5. The mouse Fgfr4 gene was mapped to mouse chromosome 13 located from base pair 54,235,030 to base pair to 54,251,130, in a region of homology of synteny with distal human 5q. (Avraham et al., Genomics, 21, 656-658).

The FGFR4 gene spans approximately 11.3 kb and is composed of 18 exons ranging in size from 17 to 600 bp. Exon 1 is untranslated and preceded by structural elements characteristic of a TATA-free promoter. Short tandem repeat polymorphisms were identified in introns 2 and 16 of FGFR4. (Kostrzewa et al., Mammalian Genome, 9, 131-135)

Although FGFRs generally have been shown to have wide distribution throughout the body. To date, FGFR4 has only been found in a few tissues. Among a wide variety of cells and tissues tested, including human lymphocytes and macrophages, FGFR4 was found to be expressed in the lung and in some tumors of lung origin as well as in malignancies not derived from lung tissues. (Holtrich et al., Proc. Nat. Acad. Sci., 88, 10411-10415). FGFR4 has also been found to be expressed in the liver and in adipose tissues. (Patel et al., JCEM, 90(2), 1226-1232).

FGFR4 has also been found to be expressed in certain carcinoma cell lines. In the FGFR4 gene transcript from a mammary carcinoma cell line, a G-to-A transition was discovered that resulted in the substitution of glycine by arginine at position 388 in the transmembrane domain of the receptor. The arg388 allele was also found in cell lines derived from a variety of other tumor types as well as in the germline of cancer patients and healthy individuals. Analysis of 3 geographically separated groups indicated that it occurs in approximately 50% of humans. Investigation of the clinical data of 84 breast cancer patients revealed that homo- or heterozygous carriers of the arg388 allele had a significantly reduced disease-free survival time (P=0.01) within a median follow-up of 62 months. Moreover, the FGFR4 arg388 allele was associated with early metastasis and advanced tumor-node metastasis stage in 82 colon cancer patients. Consistent with this finding, the mammary tumor cell line expressing FGFR4 arg388 exhibited increased motility relative to cells expressing the FGFR4 gly388 isotype. The results supported the conclusion that the FGFR4 arg388 allele represents a determinant that is innocuous in healthy individuals but predisposes cancer patients for significantly accelerated disease progression. (Bange et al., Cancer Res., 62, 840-847).

Fibroblast growth factor 1 (FGF1) plays an important role in adipogenesis. (Hutley et al., Diabetes, 53, 3097-3106). Further, FGF1 has been shown to bind FGFR4 which is also expressed in adipose tissue, (Patel et al., JCEM, 90(2), 1226-1232).

Additionally, FGFR4 has been shown to play a role in systemic lipid and glucose homeostasis. FGFR4-deficient mice on a normal diet exhibited features of metabolic syndrome that include increase mass of insulin resistance, in addition to hypercholesterolemia. FGFR4 deficiency was shown to alleviate high-fat diet-induced fatty liver in a certain obese mouse model, which is also a correlate of metabolic syndrome. Restoration of FGFR4, specifically in hepatocytes of FGFR4 deficient mice, decrease plasma lipid level and restored the high fat diet-induced fatty liver but failed to restore glucose tolerance and sensitivity to insulin. (Huang et al., Diabetes, 56, 2501-2510).

Effective treatments are needed for diabetes, obesity, metabolic syndrome and other diseases and conditions thereof. Provided herein is data establishing a role for FGFR4 in both diabetes and obesity. The data supports targeting of FGFR4 for treatment of a range of metabolic conditions, including diabetes, obesity and metabolic syndrome. Therefore, among the objectives herein, it is an object to provide compounds, compositions and methods for the treatment of such diseases and conditions.

Antisense technology is emerging as an effective means for reducing the expression of specific gene products and therefore may prove to be uniquely useful in a number of therapeutic, diagnostic, and research applications for the modulation of FGFR4 expression.

The present invention provides compositions and methods for modulating FGFR4 expression, including modulation of the truncated mutants and alternatively spliced forms of FGFR4.

There remains a need for non-invasive therapies to promote weight loss in obese individuals with improved specificity to avoid side-effects and the present invention meets this need.

SUMMARY OF THE INVENTION

The present invention is directed to compounds, particularly antisense oligonucleotides, which are targeted to a nucleic acid encoding fibroblast growth factor receptor 4 (FGFR4), and which modulate the expression of FGFR4. Pharmaceutical and other compositions comprising the compounds of the invention are also provided. Further provided are methods of modulating the expression of FGFR4 in cells or tissues comprising contacting said cells or tissues with one or more of the antisense compounds or compositions of the invention. Further provided are methods of treating an animal, particularly a human, suspected of having or being prone to a disease or condition associated with expression of FGFR4 by administering a therapeutically or prophylactically effective amount of one or more of the antisense compounds or compositions of the invention.

Methods of reducing FGFR4 expression, activity and/or nucleic acid levels include administering to an individual a compound targeted to a nucleic acid encoding FGFR4. In certain embodiments, the compound is administered in a composition. Compounds targeted to a FGFR4 nucleic acid may be targeted to sequences as set forth in GENBANK® Accession Nos. AY493377.2, BC033313.1, BQ567109.1, NM_(—)008011.1, nucleotides 790799 to 800614 of GENBANK® Accession No NT_(—)039586.1, nucleotides 792000 to 811000 of GENBANK® Accession No. NT_(—)039586.5, AF202063.1, AF359241.1, BF305431.1, BM803172.1, NM_(—)002011.3, NM_(—)022963.1, nucleotides 21323018 to 21335213 of GENBANK® Accession No. NT_(—)023133.11; and nucleotides 8583892 to 8595932 of GENBANK® Accession No. NT_(—)023132.9. All of the in GENBANK® Accession Nos. along with their associated sequence and structural data pertaining to such sequences including gene organization and structural elements that may be found in sequence databases such as the National Center for Biotechnology Information (NCBI) are incorporated herein by reference in their entirety.

In certain embodiments, the compounds are antisense compounds. In certain embodiments, the antisense compounds are oligomeric antisense compounds. In certain embodiment the oligomeric antisense compounds are or include modified or unmodified oligonucleotides. In certain embodiments, the antisense compounds are single stranded modified oligonucleotides.

Provided herein are methods, compounds and compositions for the treatment, prevention, slowed progression of and/or amelioration of diabetes, obesity, metabolic syndrome or related diseases or conditions thereof.

Provided herein are methods, compounds and compositions for lowering body fat content and improving blood glucose control or tolerance. In certain embodiments, the methods, compounds and compositions are for improving insulin sensitivity. Also provided are methods, compounds and compositions for the reduction of glucose levels. In certain embodiments, such glucose levels can be blood, plasma and/or serum glucose levels. In certain embodiments, such glucose levels can be fed or fasting glucose levels. In certain embodiments, such glucose levels are fed or fasting blood glucose levels. In certain embodiments, such methods include administering to a subject an antisense compound targeted to a nucleic acid encoding fibroblast growth factor receptor 4.

Further provided are methods for treating, preventing and/or ameliorating diabetes, obesity or metabolic syndrome, or another disease or condition thereof in an individual. Such method includes selecting an individual diagnosed with diabetes, obesity or metabolic syndrome or other disease or condition, administering to the individual a therapeutically effective amount of an antisense compound targeted to an fibroblast growth factor receptor 4 nucleic acid, and monitoring factors related to diabetes, obesity or metabolic syndrome or other related disease or condition.

Further provided are methods of increasing metabolic rate. Also provided are methods for lowering body weight gain. Also provided are methods for lowering abdominal fat. Abdominal fat can include perirenal and/or epididymal fat pad weight. Also provided are methods for lowering whole body fat content. Such methods include administering to a subject an antisense compound targeted to a nucleic acid encoding fibroblast growth factor receptor 4. In certain embodiments, such methods include the administration of a therapeutically effective amount of an antisense compound targeted to an fibroblast growth factor receptor 4 nucleic acid. In certain embodiments, the compound is administered in a composition. In certain embodiments the subject is an animal. In certain embodiments the animal is a human. In certain embodiments, the subject to which the antisense compound is administered and in which metabolic rate is increased and/or weight or fat content is lowered has one or more of the diseases or disorders listed above. In certain embodiments, the subject to which the antisense compound is administered and in which metabolic rate is increased and/or weight or fat content is lowered has obesity, diabetes or metabolic syndrome.

In certain embodiments, the methods, compounds and compositions are for the treatment, prevention and/or amelioration of diabetes, obesity and metabolic syndrome. In certain embodiments, the methods, compounds and compositions are for the treatment, prevention and/or amelioration of type 2 diabetes, and type 2 diabetes with dyslipidemia. In certain embodiments, such methods, compounds and compositions are used to treat, slow, prevent, delay or ameliorate the sequelae of diabetes including, but not limited to, retinopathy, neuropathy, cardiovascular complications and nephropathy.

It is understood that the terms individual and subject are used interchangeably herein and that any of the methods provided herein may be useful for a subject or an individual and that subject or individual can be an animal and particularly a human.

In any of the methods provided, an fibroblast growth factor receptor 4 nucleic acid may be the sequence set forth in SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, or 14. Thus, the antisense compound may be targeted to an fibroblast growth factor receptor 4 nucleic acid as set forth in SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, or 14.

In any of the aforementioned methods, administration of the antisense compound may comprise parenteral administration. The parenteral administration may further comprise subcutaneous or intravenous administration.

In any of the compounds, compositions or methods provided herein, the antisense compound may have least 80%, at least 90%, or at least 95% complementarity to 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, or 14. Alternatively, the antisense compound may have 100% complementarity to SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, or 14.

The antisense compounds provided herein and employed in any of the described methods may be 8 to 80 subunits in length, 12 to 50 subunits in length, 12 to 30 subunits in length, 15 to 30 subunits in length, 18 to 24 subunits in length, 19 to 22 subunits in length, or 20 subunits in length. Further, the antisense compounds employed in any of the described methods may be antisense oligonucleotides 8 to 80 nucleotides in length, 12 to 50 nucleotides in length, 12 to 30 nucleotides in length 15 to 30 nucleotides in length, 18 to 24 nucleotides in length, 19 to 22 nucleotides in length, or 20 nucleotides in length.

In any of the compounds, compositions and methods provided, the antisense compound may be an antisense oligonucleotide. Moreover, the antisense oligonucleotide may be chimeric. The chimeric antisense oligonucleotide may be a gapmer antisense oligonucleotide. The gapmer antisense oligonucleotide may comprise a gap segment of ten 2′-deoxynucleotides positioned between wing segments of five 2′-MOE nucleotides.

In any of the compounds, compositions and methods provided, the antisense compounds may have at least one modified internucleoside linkage. Additionally, each internucleoside linkage may be a phosphorothioate internucleoside linkage. Each cytosine may be a 5-methyl cytosine.

A compound for treatment of obesity and metabolic syndrome may be an antisense compound 12 to 30 nucleobases targeted to an fibroblast growth factor receptor 4 nucleic acid. The compound may have at least 70% to 100% complementarity to any of SEQ ID NOSEQ ID NOs: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, or 14. The antisense oligonucleotide may be a gapmer antisense oligonucleotide. The gapmer antisense oligonucleotide may comprise a gap segment of ten 2′-deoxynucleotides positioned between wing segments of five 2′-MOE nucleotides.

The antisense compounds may have at least one modified internucleoside linkage. Additionally, each internucleoside linkage may be a phosphorothioate internucleoside linkage. Each cytosine may be a 5-methyl cytosine.

DETAILED DESCRIPTION OF THE INVENTION Definitions

Unless defined otherwise, all technical and scientific terms used herein have the same meaning as is commonly understood by on of skill in the art to which the invention(s) belong. Unless specific definitions are provided, the nomenclature utilized in connection with, and the procedures and techniques of, analytical chemistry, synthetic organic chemistry, and medicinal and pharmaceutical chemistry described herein are those well known and commonly used in the art. Standard techniques may be used for chemical synthesis, chemical analysis, pharmaceutical preparation, formulation and delivery, and treatment of subjects. Certain such techniques and procedures may be found for example in “Antisense Drug Technology: Principles, Strategies, and Applications.” by Stanley Crooke, Boca Raton: Taylor & Francis Group, 2008; “Carbohydrate Modifications in Antisense Research” Edited by Sangvi and Cook, American Chemical Society, Washington D.C., 1994; and “Remington's Pharmaceutical Sciences,” Mack Publishing Co., Easton, Pa., 18th edition, 1990; and which is hereby incorporated by reference for any purpose. Where permitted, all patents, patent applications, published applications and publications, GENBANK sequences, websites and other published materials referred to throughout the entire disclosure herein, unless noted otherwise, are incorporated by reference in their entirety. All of the in GENBANK® Accession Nos. along with their associated sequence and structural data pertaining to such sequences including gene organization and structural elements that may be found in sequence databases such as the National Center for Biotechnology Information (NCBI) are incorporated herein by reference in their entirety. In the event that there is a plurality of definitions for terms herein, those in this section prevail. Where reference is made to a URL or other such identifier or address, it is understood that such identifiers can change and particular information on the internet can come and go, but equivalent information can be found by searching the internet. Reference thereto evidences the availability and public dissemination of such information.

“FGFR4” means fibroblast growth factor receptor 4.

“Obesity” is defined as an excessively high amount of body fat or adipose tissue in relation to lean body mass. The amount of body fat (or adiposity) includes concern for both the distribution of fat throughout the body and the size of the adipose tissue deposits. Body fat distribution can be estimated by skin-fold measures, waist-to-hip circumference ratios, or techniques such as ultrasound, computed tomography, or magnetic resonance imaging. According to the Center for Disease Control and Prevention, individuals with a body mass index (BMI) of 30 or more are considered obese.

“Insulin resistance” is defined as the condition in which normal amounts of insulin are inadequate to produce a normal insulin response from fat, muscle and liver cells. Insulin resistance in fat cells results in hydrolysis of stored triglycerides, which elevates free fatty acids in the blood plasma. Insulin resistance in muscle reduces glucose uptake whereas insulin resistance in liver reduces glucose storage, with both effects serving to elevate blood glucose. High plasma levels of insulin and glucose due to insulin resistance often leads to metabolic syndrome and type 2 diabetes.

“Diabetes” is (also called diabetes mellitus), is a metabolic disorder typically characterized by high levels of blood glucose. Diabetes mellitus can take one of two forms: type I or type 2.

“Type I diabetes” (also known as insulin-dependent diabetes mellitus or IDDM—strikes people under age 35, typically appearing suddenly between the ages of 10 and 16. In this form of the illness, which affects 10 percent of diabetics, a virus or autoimmune reaction probably destroys the insulin-producing cells. Insulin normally enables sugar to pass from the blood into the body's cells. Since a person with type I diabetes has completely stopped producing insulin, lifelong treatment means taking insulin several times daily.

“Type 2 diabetes,” (also known as diabetes mellitus type 2, and formerly called diabetes mellitus type 2, non-insulin-dependent diabetes (NIDDM), obesity related diabetes, or adult-onset diabetes) is a metabolic disorder that is primarily characterized by insulin resistance, relative insulin deficiency, and hyperglycemia.

“Diabetic dyslipidemia” or “Type 2 diabetes with dyslipidemia” means a condition characterized by Type 2 diabetes, reduced HDL-C, elevated serum triglycerides, and elevated small, dense LDL particles.

“Metabolic disorder” refers to a condition characterized by an alteration or disturbance in metabolic function. “Metabolic” and “metabolism” are terms well know in the art and generally include the whole range of biochemical processes that occur within a living organism. Metabolic disorders include, but are not limited to, hyperglycemia, prediabetes, diabetes (type I and type 2), obesity, insulin resistance and metabolic syndrome.

“Metabolic syndrome” means a condition characterized by a clustering of lipid and non-lipid risk factors of metabolic origin. In certain embodiments, metabolic syndrome is identified by the presence of any 3 of the following factors: waist circumference of greater than 102 cm in men or greater than 88 cm in women; serum triglyceride of at least 150 mg/dL; HDL-C less than 40 mg/dL in men or less than 50 mg/dL in women; blood pressure of at least 130/85 mmHg; and fasting glucose of at least 110 mg/dL. These determinants can be readily measured in clinical practice (JAMA, 2001, 285: 2486-2497).

“IPGTT” or “Intraperitoneal Glucose Tolerance Testing” in medical practice is defined as the administration of glucose through Intraperitoneal injection to determine how quickly it is cleared from the blood. The test is usually used to test for diabetes, insulin resistance, and sometimes reactive hypoglycemia.

“ITT” or “Insulin Tolerance Test” in medical practice is defined as a test to measure insulin sensitivity through the hormone response to the stress of a low blood sugar level. The test is usually used to test for diabetes, insulin resistance, and sometimes reactive hypoglycemia.

“Metabolic rate” means the rate of metabolism or the amount of energy expended in a give period. Metabolic rate also is the amount of energy expended while at rest in a neutrally temperate environment, in the post-absorptive state (meaning that the digestive system is inactive, which requires about twelve hours of fasting in humans). The release of energy in this state is sufficient only for the functioning of the vital organs, such as the heart, lungs, brain and the rest of the nervous system, liver, kidneys, sex organs, muscles and skin. Metabolic rate decreases with age and with the loss of lean body mass. Increased cardiovascular exercise and muscle mass can increase metabolic rate. Illness, previously consumed food and beverages, environmental temperature, and stress levels can affect one's overall energy expenditure, and can affect one's metabolic rate as revealed by gas analysis. It is measured when the person is at complete rest, but awake.

“Prevention” refers to delaying or forestalling the onset or development of a condition or disease for a period of time from hours to days, preferably weeks to months.

“Amelioration” refers to a lessening of at least one indicator of the severity of a condition or disease. The severity of indicators may be determined by subjective or objective measures which are known to those skilled in the art.

“Treatment” refers to administering a composition of the invention to effect an alteration or improvement of the disease or condition. Prevention, amelioration, and/or treatment may require administration of multiple doses at regular intervals, or prior to onset of the disease or condition to alter the course of the disease or condition. Moreover, a single agent may be used in a single individual for each prevention, amelioration, and treatment of a condition or disease sequentially, or concurrently.

“Slows progression” means decrease in the development of the said disease.

“Cures” means a method or course that restores health or a prescribed treatment for an illness.

“Expression” refers to all the functions and steps by which a gene's coded information is converted into structures present and operating in a cell. Such structures include, but are not limited to the products of transcription and translation.

“Modulation” refers to a perturbation of function or activity when compared to the level of the function or activity prior to modulation. For example, modulation includes the change, either an increase (stimulation or induction) or a decrease (inhibition or reduction) in gene expression. As further example, modulation of expression can include perturbing splice site selection of pre-mRNA processing.

“Animal” refers to a human or non-human animal, including, but not limited to, mice, rats, rabbits, dogs, cats, pigs, and non-human primates, including, but not limited to, monkeys and chimpanzees.

“Subject” refers to an animal, including, but not limited to a human, to whom a pharmaceutical composition is administered.

“Oligonucleotide” means a polymer of linked nucleosides each of which can be modified or unmodified, independent one from another.

“Single-stranded modified oligonucleotide” means a modified oligonucleotide which is not hybridized to a complementary strand.

“Nucleoside” means a nucleobase linked to a sugar.

“Linked nucleosides” means adjacent nucleosides which are bonded together.

“Nucleobase” means a heterocyclic moiety capable of pairing with a base of another nucleic acid.

“Contiguous nucleobases” means nucleobases immediately adjacent to each other.

“Modified oligonucleotide” means an oligonucleotide comprising a modified internucleoside linkage, a modified sugar, and/or a modified nucleobase.

“Nucleobase sequence” means the order of contiguous nucleobases independent of any sugar, linkage, and/or nucleobase modification.

“Internucleoside linkage” refers to the chemical bond between nucleosides.

“5-methylcytosine” means a cytosine modified with a methyl group attached to the 5′ position. A 5-methylcytosine is a modified nucleobase

“Modified internucleoside linkage” refers to a substitution and/or any change from a naturally occurring internucleoside bond (i.e. a phosphodiester internucleoside bond).

“Modified nucleobase” refers to any nucleobase other than adenine, cytosine, guanine or thymidine.

“Phosphorothioate linkage” means a linkage between nucleosides where the phosphodiester bond is modified by replacing one of the non-bridging oxygen atoms with a sulfur atom. A phosphorothioate linkage is a modified internucleoside linkage.

“2′-O-methoxyethyl” refers to an O-methoxy-ethyl modification of the 2′ position of a furosyl ring. A 2′-O-methoxyethyl modified sugar is a modified sugar.

“Modified sugar” refers to a substitution and/or any change from a natural sugar.

“Diluent” means an ingredient in a composition that lacks pharmacological activity, but is pharmaceutically necessary or desirable. For example, in drugs that are injected the diluent may be a liquid, e.g. saline solution.

“Salts” mean physiologically and pharmaceutically acceptable salts of antisense compounds, i.e., salts that retain the desired biological activity of the parent oligonucleotide and do not impart undesired toxicological effects thereto.

“Linked deoxynucleoside” means a nucleic acid base (A, G, C, T, U) substituted by deoxyribose linked by a phosphate ester to form a nucleotide.

“Pharmaceutically acceptable carrier “or “excipient” means a pharmaceutically acceptable solvent, suspending agent or any other pharmacologically inert vehicle for delivering one or more nucleic acids to an animal. The excipient may be liquid or solid and is selected, with the planned manner of administration in mind, so as to provide for the desired bulk, consistency, etc., when combined with a nucleic acid and the other components of a given pharmaceutical composition.

“Bicyclic sugar” means a furosyl ring modified by the bridging of two non-geminal ring atoms. A bicyclic sugar is a modified sugar.

“Pharmaceutical agent” refers to a substance provides a therapeutic benefit when administered to a subject.

“Therapeutically effective amount” refers to an amount of a pharmaceutical agent that provides a therapeutic benefit to an animal. In certain embodiments, a therapeutically effective amount of antisense compound targeted to an FGFR4 nucleic acid is an amount that improves adiposity in the individual.

“Prophylactically effective amount” refers to an amount of a pharmaceutical agent that provides a prophylactic or preventative benefit to an animal. In certain embodiments, a prophylactically effective amount of antisense compound targeted to an FGFR4 nucleic acid is an amount that improves adiposity in the individual.

A “Pharmaceutical composition” means a mixture of substances suitable for administering to an individual. For example, a pharmaceutical composition may comprise an antisense oligonucleotide and a sterile aqueous solution.

“Administering” means providing a pharmaceutical agent or composition to an individual, and includes, but is not limited to administering by a medical professional and self-administering.

“Co-administration” refers to administration of two or more pharmaceutical agents to an animal. The two or more pharmaceutical agents may be in a single pharmaceutical composition, or may be in separate pharmaceutical compositions. Each of the two or more pharmaceutical agents may be administered through the same or different routes of administration. Co-administration encompasses administration in parallel or sequentially.

“Administered concomitantly” refers to the administration of two agents at the same time in any manner in which the pharmacological effects of both are manifest in the patient at the same time. Concomitant administration does not require that both agents be administered in a single pharmaceutical composition, in the same dosage form, or by the same route of administration.

“Individual” means a human or non-human animal selected for treatment or therapy.

“Individual”, “subject”, and “human” may be used interchangeably herein.

“Duration” means the period of time during which an activity or event continues. In certain embodiments, the duration of treatment is the period of time during which doses of a pharmaceutical agent are administered.

“Parenteral administration,” means administration through injection or infusion. Parenteral administration includes, but is not limited to, subcutaneous administration, intravenous administration, or intramuscular administration.

“Subcutaneous administration” means administration just below the skin.

“Intravenous administration” means administration into a vein.

“Intraperitoneal administration” means administration through infusion or injection into the peritoneum.

“Dose” means a specified quantity of a pharmaceutical agent provided in a single administration. In certain embodiments, a dose may be administered in two or more boluses, tablets, or injections. For example, in certain embodiments, where subcutaneous administration is desired, the desired dose requires a volume not easily accommodated by a single injection. In such embodiments, two or more injections may be used to achieve the desired dose. In certain embodiments, a dose may be administered in two or more injections to minimize injection site reaction in an individual.

“Dosage unit” means a form in which a pharmaceutical agent is provided. In certain embodiments, a dosage unit is a vial containing lyophilized antisense oligonucleotide. In certain embodiments, a dosage unit is a vial containing reconstituted antisense oligonucleotide.

“Pharmaceutical agent” means a substance which provides a therapeutic benefit when administered to an individual. For example, in certain embodiments, an antisense oligonucleotide targeted to FGFR4 is a pharmaceutical agent.

“Active pharmaceutical ingredient” means the substance in a pharmaceutical composition that provides a desired effect.

“Major risk factors” refers to factors that contribute to a high risk for a particular disease or condition

“Efficacy” means the ability to produce a desired effect.

“Acceptable safety profile” means a pattern of side effects that is within clinically acceptable limits.

“Side effects” means physiological responses attributable to a treatment other than desired effects. In certain embodiments, side effects include, without limitation, injection site reactions, liver function test abnormalities, renal function abnormalities, liver toxicity, renal toxicity, central nervous system abnormalities, and myopathies. For example, increased aminotransferase levels in serum may indicate liver toxicity or liver function abnormality. For example, increased bilirubin may indicate liver toxicity or liver function abnormality.

“Injection site reaction” means inflammation or abnormal redness of skin at a site of injection in an individual.

“Individual compliance” means adherence to a recommended or prescribed therapy by an individual.

“Therapeutic lifestyle change” means dietary and lifestyle changes intended to lower overall body weight and reduce the risk of developing diabetes and obesity, and includes recommendations for dietary intake of total daily calories, total fat, saturated fat, polyunsaturated fat, monounsaturated fat, carbohydrate, protein, cholesterol, insoluble fiber, as well as recommendations for physical activity.

Overview

Effective treatments are needed for diabetes, obesity, metabolic syndrome and other diseases and conditions thereof. Because of its role in both diabetes and obesity, FGFR4 has been developed as an antisense target. Antisense compounds have been developed which target nucleic acid encoding FGFR4 and which function to reduce FGFR4 levels in a subject.

The antisense compounds provided herein are therefore useful for treating a number of metabolic conditions, including diabetes, obesity and metabolic syndrome. Such treatments encompass a therapeutic regimen that results in a clinically desirable outcome. The clinically desired outcomes may be tied to glucose metabolism. For example, the antisense compounds and methods provided herein are useful for improving blood glucose control or tolerance and for improving insulin sensitivity in a subject in need thereof. The antisense compounds and methods provided herein are also useful for reducing glucose levels in a subject in need thereof. The compounds and methods are particularly useful for reducing blood, plasma and/or serum glucose levels. The compounds and methods are useful for reducing both fed and fasting glucose levels. Such clinical outcomes are desirable in disease and disorders related to glucose metabolism and insulin resistance including, for example, diabetes, particularly type 2 diabetes, obesity and metabolic syndrome. Therefore, the antisense compounds and methods provided herein are useful for the treatment of such diseases and disorders.

The compounds and methods are also particularly useful for increasing metabolic rate and, in turn, lowering body weight gain. The compounds and methods are also particularly useful for lowering epididymal and perirenal fat pad weight and whole body fat content. Such clinical outcomes are desirable in conditions such as metabolic syndrome, obesity, diabetes, in particular type 2 diabetes, type 2 diabetes with dyslipidemia. Therefore, the antisense compounds and methods provided herein are useful for the treatment of such diseases and disorders.

Metabolic syndrome is a condition characterized by a clustering of lipid and non-lipid risk factors of metabolic origin. In certain embodiments, metabolic syndrome is identified by the presence of any 3 of the following factors: waist circumference of greater than 102 cm in men or greater than 88 cm in women; serum triglyceride of at least 150 mg/dL; HDL-C less than 40 mg/dL in men or less than 50 mg/dL in women; blood pressure of at least 130/85 mmHg; and fasting glucose of at least 110 mg/dL. These determinants can be readily measured in clinical practice (JAMA, 2001, 285: 2486-2497). Accordingly, the compounds and methods provided herein may be used to treat individuals exhibiting one or more risk factors for metabolic syndrome. Particularly, the compounds and methods provided herein may be used to reduce body weight, thereby likely reducing waist circumference, and fasting glucose levels.

As illustrated herein, administration of an antisense oligonucleotide targeted to FGFR4 to animals models of diabetes and obesity which exhibit insulin resistance, hyperglycemia and hyperlipidemia, resulted in antisense inhibition of FGFR4, a reduction in body fat weight, percentage body fat content and tissue weight of both epididymal and perirenal fat. Particularly, expression of FGFR4 was reduced. Thus, it is demonstrated that in an experimental model of obesity, antisense inhibition of FGFR4 results in reduced glucose levels and reduced lipogenesis. Accordingly, provided herein are methods of reducing lipogenesis and blood glucose through the administration of an antisense compound targeted to an FGFR4 nucleic acid. Blood glucose and triglyceride levels are considered a risk factor for development of diabetes, obesity and metabolic syndrome. Accordingly, also provided herein are methods for the treatment, prevention and/or amelioration of diabetes, obesity and metabolic syndrome, and for the treatment, prevention and/or amelioration of associated disorders.

Obesity is characterized by an excess of subcutaneous fat in proportion to lean body mass. In obesity, adipose tissue, as opposed to most tissues in the body, will continue to grow. Growth of the adipose tissue results from both the enlargement of mature adipocytes and the formation of new adipocytes from adipocyte precursor cells (preadipocytes). Thus, fat accumulation is associated with increase in the size (hypertrophy) as well as the number (hyperplasia) of adipose tissue cells.

The Examples provided herein show that reduction of FGFR4 by antisense oligonucleotides results in a reduction in body fat content. As indicated by the description of fat accumulation above, the lowered body fat content is partially due to a decrease in adipocyte size (see FIG. 4.) Additionally, due to the function of FGFR4 in cell differentiation and angiogenesis, the lowered body fat content is also achieved by a reduction adipocyte proliferation.

Certain Indications

In certain embodiments, the invention provides methods of treating an individual comprising administering one or more pharmaceutical compositions of the present invention. In certain embodiments, the individual has diabetes, obesity, metabolic syndrome and/or associated disorders including but not limited to type 2 diabetes, type 2 diabetes with dyslipidemia, dyslipidemia, hyperlipidemia, or non-alcoholic fatty liver disease.

In one embodiment are methods for methods for treating obesity or metabolic syndrome, or alternatively methods for decreasing blood glucose levels or triglyceride levels, by administering to an individual suffering from obesity or elevated glucose or triglyceride levels a therapeutically effective amount of an antisense compound targeted to an FGFR4 nucleic acid. In another embodiment, a method of decreasing body fat content comprises selecting an individual in need of a decrease in body fat content, and administering to the individual a therapeutically effective amount of an antisense compound targeted to an FGFR4 nucleic acid. In a further embodiment, a method of reducing risk of development of obesity and metabolic syndrome includes selecting an individual having elevated blood glucose or triglyceride levels and one or more additional indicators risk of development of obesity or metabolic syndrome, and administering to the individual a therapeutically effective amount of an antisense compound targeted to an FGFR4 nucleic acid.

In one embodiment, administration of a therapeutically effective amount of an antisense compound targeted an FGFR4 nucleic acid is accompanied by monitoring of glucose levels in the serum of an individual, to determine an individual's response to administration of the antisense compound. An individual's response to administration of the antisense compound is used by a physician to determine the amount and duration of therapeutic intervention.

A physician may determine the need for therapeutic intervention for individuals in cases where more or less aggressive blood glucose or adiposity therapy is needed. The practice of the methods herein may be applied to any altered guidelines provided by the NCEP, or other entities that establish guidelines for physicians used in treating any of the diseases or conditions listed herein, for determining and diagnosing metabolic syndrome.

In one embodiment, administration of an antisense compound targeted an FGFR4 nucleic acid is parenteral administration. Parenteral administration may be intravenous or subcutaneous administration. Accordingly, in another embodiment, administration of an antisense compound targeted to an FGFR4 nucleic acid is intravenous or subcutaneous administration. Administration may include multiple doses of an antisense compound targeted to an FGFR4 nucleic acid.

In certain embodiments a pharmaceutical composition comprising an antisense compound targeted to FGFR4 is for use in therapy. In certain embodiments, the therapy is the reduction of blood glucose, body fat content, or fat tissue weight in an individual. In certain embodiments, the therapy is the treatment of obesity, metabolic syndrome, mixed dyslipidemia, type 2 diabetes, type 2 diabetes with dyslipidemia, dyslipidemia, hypertriglyceridemia, hyperlipidemia, or non-alcoholic fatty liver disease.

In certain embodiments pharmaceutical composition comprising an antisense compound targeted to FGFR4 is used for the preparation of a medicament for reduction of blood glucose, blood glucose, body fat content, or fat tissue weight. In certain embodiments pharmaceutical composition comprising an antisense compound targeted to FGFR4 is used for the preparation of a medicament for reducing body fat content and obesity. In certain embodiments an antisense compound targeted to FGFR4 is used for the preparation of a medicament for the treatment of metabolic syndrome disorders. In certain embodiments an antisense compound targeted to FGFR4 is used for the preparation of a medicament of type 2 diabetes, type 2 diabetes with dyslipidemia, dyslipidemia, hypertriglyceridemia, hyperlipidemia, hyperfattyacidemia, hepatic steatosis, non-alcoholic steatohepatitis, or non-alcoholic fatty liver disease.

Certain Combination Therapies

In certain embodiments, one or more pharmaceutical compositions of the present invention are co-administered with one or more other pharmaceutical agents. In certain embodiments, such one or more other pharmaceutical agents are designed to treat the same disease or condition as the one or more pharmaceutical compositions of the present invention. In certain embodiments, such one or more other pharmaceutical agents are designed to treat a different disease or condition as the one or more pharmaceutical compositions of the present invention. In certain embodiments, such one or more other pharmaceutical agents are designed to treat an undesired effect of one or more pharmaceutical compositions of the present invention. In certain embodiments, one or more pharmaceutical compositions of the present invention are co-administered with another pharmaceutical agent to treat an undesired effect of that other pharmaceutical agent. In certain embodiments, one or more pharmaceutical compositions of the present invention and one or more other pharmaceutical agents are administered at the same time. In certain embodiments, one or more pharmaceutical compositions of the present invention and one or more other pharmaceutical agents are administered at different times. In certain embodiments, one or more pharmaceutical compositions of the present invention and one or more other pharmaceutical agents are prepared together in a single formulation. In certain embodiments, one or more pharmaceutical compositions of the present invention and one or more other pharmaceutical agents are prepared separately.

In certain embodiments, pharmaceutical agents that may be co-administered with a pharmaceutical composition comprising an antisense compound targeted to a FGFR4 nucleic acid include glucose-lowering agents and therapies. In some embodiments, the glucose-lowering agent is a PPAR agonist (gamma, dual, or pan), a dipeptidyl peptidase (IV) inhibitor, a GLP-1 analog, insulin or an insulin analog, an insulin secretagogue, a SGLT2 inhibitor, a human amylin analog, a biguanide, an alpha-glucosidase inhibitor, a meglitinide, a thiazolidinedione, or a sulfonylurea.

In some embodiments, the glucose-lowering therapeutic is a GLP-1 analog. In some embodiments, the GLP-1 analog is exendin-4 or liraglutide.

In other embodiments, the glucose-lowering therapeutic is a sulfonylurea. In some embodiments, the sulfonylurea is acetohexamide, chlorpropamide, tolbutamide, tolazamide, glimepiride, a glipizide, a glyburide, or a gliclazide.

In some embodiments, the glucose lowering drug is a biguanide. In some embodiments, the biguanide is metformin, and in some embodiments, blood glucose levels are decreased without increased lactic acidosis as compared to the lactic acidosis observed after treatment with metformin alone.

In some embodiments, the glucose lowering drug is a meglitinide. In some embodiments, the meglitinide is nateglinide or repaglinide.

In some embodiments, the glucose-lowering drug is a thiazolidinedione. In some embodiments, the thiazolidinedione is pioglitazone, rosiglitazone, or troglitazone. In some embodiments, blood glucose levels are decreased without greater weight gain than observed with rosiglitazone treatment alone.

In some embodiments, the glucose-lowering drug is an alpha-glucosidase inhibitor. In some embodiments, the alpha-glucosidase inhibitor is acarbose or miglitol.

In a certain embodiment, a co-administered glucose-lowering agent is ISIS 113715.

In a certain embodiment, glucose-lowering therapy is therapeutic lifestyle change.

In certain such embodiments, the glucose-lowering agent is administered prior to administration of a pharmaceutical composition of the present invention. In certain such embodiments, the glucose-lowering agent is administered following administration of a pharmaceutical composition of the present invention. In certain such embodiments the glucose-lowering agent is administered at the same time as a pharmaceutical composition of the present invention. In certain such embodiments the dose of a co-administered glucose-lowering agent is the same as the dose that would be administered if the glucose-lowering agent was administered alone. In certain such embodiments the dose of a co-administered glucose-lowering agent is lower than the dose that would be administered if the glucose-lowering agent was administered alone. In certain such embodiments the dose of a co-administered glucose-lowering agent is greater than the dose that would be administered if the glucose-lowering agent was administered alone.

In certain embodiments, pharmaceutical agents that may be co-administered with a pharmaceutical composition comprising an antisense compound targeted to a FGFR4 nucleic acid include anti-obesity agents. Such anti-obesity agents include but are not limited to Orlistat, Sibutramine, or Rimonabant, and may be administered as described above as adipose or body weight lowering agents.

In certain embodiments, pharmaceutical agents that may be co-administered with a pharmaceutical composition comprising an antisense compound targeted to a FGFR4 nucleic acid include antipsychotic agents. Such antipsychotic agents therapeutics may be administered as described above to reduce metabolic abnormalities associated with treatment with antipsychotic agents.

Due to the ability of FGFR4 antisense oligonucleotides to increase metabolic rate and insulin sensitivity and reduce adiposity and weight gain, these compounds can be administered to reduce metabolic abnormalities associated with treatment with antipsychotic agents. In certain embodiments the FGFR4 antisense oligonucleotide is delivered in a method of reducing metabolic abnormalities associated with the therapeutic use of psychotherapeutic agents. Such weight inducing antipsychotic agents include, but are not limited to clozapine, olanzapine, aripiprazole, risperidone and ziprasidone.

In certain embodiments the FGFR4 antisense oligonucleotide is delivered concomitant with delivery of the psychotherapeutic agent. Alternatively, delivery can be in the same formulation or can be administered separately. In certain embodiments, FGFR4 antisense oligonucleotide is administered prior to the treatment with antipsychotic agents. In a certain embodiment, the FGFR4 antisense oligonucleotide is administered after treatment with an obesity inducing drug or agent is ceased. In a particular embodiment administering of the FGFR4 antisense compound results in increased metabolic rate or decreasing adiposity or both without affecting the CNS effects of the psychotherapeutic agent

In certain embodiments, FGFR4 antisense oligonucleotides are administered in combination either in the same formulation or separate formulations with other anti-obesity drugs or agents. In certain embodiment, the anti-obesity agents are CNS based such as, but not limited to, sibutramine or GLP-1 based such as, but not limited to, liraglutide.

Further provided is a method of administering an antisense compound targeted to a FGFR4 nucleic acid via injection and further including administering a topical steroid at the injection site.

Further examples of pharmaceutical agents that may be co-administered with a pharmaceutical composition of the present invention include, but are not limited to, corticosteroids, including but not limited to prednisone; immunoglobulins, including, but not limited to intravenous immunoglobulin (IVIg); analgesics (e.g., acetaminophen); anti-inflammatory agents, including, but not limited to non-steroidal anti-inflammatory drugs (e.g., ibuprofen, COX-1 inhibitors, and COX-2, inhibitors); salicylates; antibiotics; antivirals; antifungal agents; antidiabetic agents (e.g., biguanides, glucosidase inhibitors, insulins, sulfonylureas, and thiazolidenediones); adrenergic modifiers; diuretics; hormones (e.g., anabolic steroids, androgen, estrogen, calcitonin, progestin, somatostan, and thyroid hormones); immunomodulators; muscle relaxants; antihistamines; osteoporosis agents (e.g., biphosphonates, calcitonin, and estrogens); prostaglandins, antineoplastic agents; psychotherapeutic agents; sedatives; poison oak or poison sumac products; antibodies; and vaccines.

In certain embodiments, the pharmaceutical compositions of the present invention may be administered in conjunction with a lipid-lowering therapy. In certain such embodiments, a lipid-lowering therapy is therapeutic lifestyle change. In certain such embodiments, a lipid-lowering therapy is LDL apheresis.

Antisense Compounds

Oligomeric compounds include, but are not limited to, oligonucleotides, oligonucleosides, oligonucleotide analogs, oligonucleotide mimetics, antisense compounds, antisense oligonucleotides, and siRNAs. An oligomeric compound may be “antisense” to a target nucleic acid, meaning that is capable of undergoing hybridization to a target nucleic acid through hydrogen bonding.

In certain embodiments, an antisense compound has a nucleobase sequence that, when written in the 5′ to 3′ direction, comprises the reverse complement of the target segment of a target nucleic acid to which it is targeted. In certain such embodiments, an antisense oligonucleotide has a nucleobase sequence that, when written in the 5′ to 3′ direction, comprises the reverse complement of the target segment of a target nucleic acid to which it is targeted.

In certain embodiments, the present invention provides oligonucleotides of any of a variety of ranges of lengths. In certain embodiments, the invention provides oligonucleotides consisting of X-Y linked oligonucleosides, where X and Y are each independently selected from 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, and 50; provided that X≦Y. For example, in certain embodiments, the invention provides oligonucleotides comprising: 8-9, 8-10, 8-11, 8-12, 8-13, 8-14, 8-15, 8-16, 8-17, 8-18, 8-19, 8-20, 8-21, 8-22, 8-23, 8-24, 8-25, 8-26, 8-27, 8-28, 8-29, 8-30, 9-10, 9-11, 9-12, 9-13, 9-14, 9-15, 9-16, 9-17, 9-18, 9-19, 9-20, 9-21, 9-22, 9-23, 9-24, 9-25, 9-26, 9-27, 9-28, 9-29, 9-30, 10-11, 10-12, 10-13, 10-14, 10-15, 10-16, 10-17, 10-18, 10-19, 10-20, 10-21, 10-22, 10-23, 10-24, 10-25, 10-26, 10-27, 10-28, 10-29, 10-30, 11-12, 11-13, 11-14, 11-15, 11-16, 11-17, 11-18, 11-19, 11-20, 11-21, 11-22, 11-23, 11-24, 11-25, 11-26, 11-27, 11-28, 11-29, 11-30, 12-13, 12-14, 12-15, 12-16, 12-17, 12-18, 12-19, 12-20, 12-21, 12-22, 12-23, 12-24, 12-25, 12-26, 12-27, 12-28, 12-29, 12-30, 13-14, 13-15, 13-16, 13-17, 13-18, 13-19, 13-20, 13-21, 13-22, 13-23, 13-24, 13-25, 13-26, 13-27, 13-28, 13-29, 13-30, 14-15, 14-16, 14-17, 14-18, 14-19, 14-20, 14-21, 14-22, 14-23, 14-24, 14-25, 14-26, 14-27, 14-28, 14-29, 14-30, 15-16, 15-17, 15-18, 15-19, 15-20, 15-21, 15-22, 15-23, 15-24, 15-25, 15-26, 15-27, 15-28, 15-29, 15-30, 16-17, 16-18, 16-19, 16-20, 16-21, 16-22, 16-23, 16-24, 16-25, 16-26, 16-27, 16-28, 16-29, 16-30, 17-18, 17-19, 17-20, 17-21, 17-22, 17-23, 17-24, 17-25, 17-26, 17-27, 17-28, 17-29, 17-30, 18-19, 18-20, 18-21, 18-22, 18-23, 18-24, 18-25, 18-26, 18-27, 18-28, 18-29, 18-30, 19-20, 19-21, 19-22, 19-23, 19-24, 19-25, 19-26, 19-29, 19-28, 19-29, 19-30, 20-21, 20-22, 20-23, 20-24, 20-25, 20-26, 20-27, 20-28, 20-29, 20-30, 21-22, 21-23, 21-24, 21-25, 21-26, 21-27, 21-28, 21-29, 21-30, 22-23, 22-24, 22-25, 22-26, 22-27, 22-28, 22-29, 22-30, 23-24, 23-25, 23-26, 23-27, 23-28, 23-29, 23-30, 24-25, 24-26, 24-27, 24-28, 24-29, 24-30, 25-26, 25-27, 25-28, 25-29, 25-30, 26-27, 26-28, 26-29, 26-30, 27-28, 27-29, 27-30, 28-29, 28-30, or 29-30 liked nucleosides.

In certain embodiments, an antisense compound targeted to an FGFR4 nucleic acid is 8 to 80, 12 to 50, 12 to 30 or 15 to 30 subunits in length. In other words, antisense compounds are from 8 to 80, 12 to 50, 12 to 30 or 15 to 30 linked subunits. In certain such embodiments, the antisense compounds are 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 subunits in length.

In certain embodiments, an antisense oligonucleotide targeted to an FGFR4 nucleic acid is 12 to 30 nucleotides in length. In certain such embodiments, an antisense oligonucleotide targeted to an FGFR4 nucleic acid is 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 nucleotides in length.

In certain embodiment, an antisense compound targeted to an FGFR4 nucleic acid is 15 to 30 subunits in length. In other words, antisense compounds are from 15 to 30 linked subunits. In certain such embodiments, the antisense compounds are 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 subunits in length.

In certain embodiments, an antisense oligonucleotide targeted to an FGFR4 nucleic acid is 15 to 30 nucleotides in length. In certain such embodiments, an antisense oligonucleotide targeted to an FGFR4 nucleic acid is 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 nucleotides in length.

In certain embodiments, an antisense compound targeted to an FGFR4 nucleic acid is 18 to 24 subunits in length. In other words, antisense compounds are from 18 to 24 linked subunits. In one embodiment, the antisense compounds are 18, 19, 20, 21, 22, 23, or 24 subunits in length.

In certain embodiments, an antisense oligonucleotide targeted to an FGFR4 nucleic acid is 18 to 24 nucleotides in length. In certain such embodiments, an antisense oligonucleotide targeted to an FGFR4 nucleic acid is 18, 19, 20, 21, 22, 23, or 24 nucleotides in length.

In certain embodiments, an antisense compound targeted to an FGFR4 nucleic acid is 19 to 22 subunits in length. In other words, antisense compounds are from 19 to 22 linked subunits. This embodies antisense compounds of 19, 20, 21, or 22 subunits in length.

In certain embodiments, an antisense oligonucleotide targeted to an FGFR4 nucleic acid is 19 to 22 nucleotides in length. In certain such embodiments, an antisense oligonucleotide targeted to an FGFR4 nucleic acid is 19, 20, 21, or 22 nucleotides in length.

In certain embodiments, an antisense compound targeted to an FGFR4 nucleic acid is 20 subunits in length. In certain such embodiments, antisense compounds are 20 linked subunits in length.

In certain embodiments, an antisense oligonucleotide targeted to an FGFR4 nucleic acid is 20 nucleotides in length. In certain such embodiments, an antisense oligonucleotide targeted to an FGFR4 nucleic acid is 20 linked nucleotides in length.

In certain embodiments, a shortened or truncated antisense compound targeted to an FGFR4 nucleic acid has a single subunit deleted from the 5′ end (5′ truncation), or alternatively from the 3′ end (3′ truncation). A shortened or truncated antisense compound targeted to an FGFR4 nucleic acid may have two subunits deleted from the 5′ end, or alternatively may have two subunits deleted from the 3′ end, of the antisense compound. Alternatively, the deleted nucleosides may be dispersed throughout the antisense compound, for example, in an antisense compound having one nucleoside deleted from the 5′ end and one nucleoside deleted from the 3′ end.

When a single additional subunit is present in a lengthened antisense compound, the additional subunit may be located at the 5′ or 3′ end of the antisense compound. When two are more additional subunits are present, the added subunits may be adjacent to each other, for example, in an antisense compound having two subunits added to the 5′ end (5′ addition), or alternatively to the 3′ end (3′ addition), of the antisense compound. Alternatively, the added subunits may be dispersed throughout the antisense compound, for example, in an antisense compound having one subunit added to the 5′ end and one subunit added to the 3′ end.

It is possible to increase or decrease the length of an antisense compound, such as an antisense oligonucleotide, and/or introduce mismatch bases without eliminating activity. For example, in Woolf et al. (Proc. Natl. Acad. Sci. USA 89:7305-7309, 1992), a series of antisense oligonucleotides 13-25 nucleobases in length were tested for their ability to induce cleavage of a target RNA in an oocyte injection model. Antisense oligonucleotides 25 nucleobases in length with 8 or 11 mismatch bases near the ends of the antisense oligonucleotides were able to direct specific cleavage of the target mRNA, albeit to a lesser extent than the antisense oligonucleotides that contained no mismatches. Similarly, target specific cleavage was achieved using 13 nucleobase antisense oligonucleotides, including those with 1 or 3 mismatches.

Gautschi et al (J. Natl. Cancer Inst. 93:463-471, March 2001) demonstrated the ability of an oligonucleotide having 100% complementarity to the bcl-2 mRNA and having 3 mismatches to the bcl-xL mRNA to reduce the expression of both bcl-2 and bcl-xL in vitro and in vivo. Furthermore, this oligonucleotide demonstrated potent anti-tumor activity in vivo.

(Maher and Dolnick (Nuc. Acid. Res. 16:3341-3358, 1988) tested a series of tandem 14 nucleobase antisense oligonucleotides, and a 28 and 42 nucleobase antisense oligonucleotides comprised of the sequence of two or three of the tandem antisense oligonucleotides, respectively, for their ability to arrest translation of human DHFR in a rabbit reticulocyte assay. Each of the three 14 nucleobase antisense oligonucleotides alone was able to inhibit translation, albeit at a more modest level than the 28 or 42 nucleobase antisense oligonucleotides.

Antisense compounds targeted to an FGFR4 nucleic acid are synthesized in vitro and do not include genetic vector constructs designed to direct the in vivo synthesis of antisense molecules. In certain embodiments, the compounds provided herein targeted to an FGFR4 nucleic acid are specific for FGFR4 meaning they are not cross-reactive with other FGF receptor subtypes.

Antisense Compound Motifs

In certain embodiments, antisense compounds targeted to an FGFR4 nucleic acid have chemically modified subunits arranged in patterns, or motifs, to confer to the antisense compounds properties such as enhanced the inhibitory activity, increased binding affinity for a target nucleic acid, or resistance to degradation by in vivo nucleases.

Chimeric antisense compounds typically contain at least one region modified so as to confer increased resistance to nuclease degradation, increased cellular uptake, increased binding affinity for the target nucleic acid, and/or increased inhibitory activity. A second region of a chimeric antisense compound may serve as a substrate for the cellular endonuclease RNase H, which cleaves the RNA strand of an RNA:DNA duplex.

Antisense compounds having a gapmer motif are considered chimeric antisense compounds. In a gapmer an internal position having a plurality of nucleotides that supports RNase H cleavage is positioned between external regions having a plurality of nucleotides that are chemically distinct from the nucleosides of the internal region. In the case of an antisense oligonucleotide having a gapmer motif, the gap segment generally serves as the substrate for endonuclease cleavage, while the wing segments comprise modified nucleosides. The regions of a gapmer are differentiated by the types of sugar moieties comprising each distinct region. The types of sugar moieties that are used to differentiate the regions of a gapmer may in some embodiments include β-D-ribonucleosides, β-D-deoxyribonucleosides, 2′-modified nucleosides (such 2′-modified nucleosides may include 2′-MOE, and 2′-O—CH₃, among others), and bicyclic sugar modified nucleosides (such bicyclic sugar modified nucleosides may include those having a 4′-(CH2)n—O-2′ bridge, where n=1 or n=2). In general, each distinct region comprises uniform sugar moieties. The wing-gap-wing motif is frequently described as “X-Y-Z”, where “X” represents the length of the 5′ wing region, “Y” represents the length of the gap region, and “Z” represents the length of the 3′ wing region.

In one embodiment, antisense compounds targeted to an FGFR4 nucleic acid possess a 5-10-5 gapmer motif.

Target Nucleic Acids, Target Regions and Nucleotide Sequences

Gene Targets

Nucleotide sequences that encode Mus musculus FGFR4 include, without limitation, the following: GENBANK® Accession No. AY493377.2, incorporated herein as SEQ ID NO: 9 GENBANK® Accession No. BC033313.1, incorporated herein as SEQ ID NO: 10; GENBANK® Accession No. BQ567109.1 incorporated herein as SEQ ID NO: 11; GENBANK® Accession No. NM_(—)008011.1 incorporated herein as SEQ ID NO: 12; and nucleotides 790799 to 800614 of GENBANK® Accession No NT_(—)039586. incorporated herein as SEQ ID NO: 13; and nucleotides 792000 to 811000 of GENBANK® Accession No. NT_(—)039586.5 incorporated herein as SEQ ID NO: 14.

Nucleotide sequences that encode human FGFR4 include, without limitation, the following: GENBANK® Accession No. AF202063.1, incorporated herein as SEQ ID NO: 1; GENBANK® Accession No. AF359241.1, incorporated herein as SEQ ID NO: 2; GENBANK® Accession No. BF305431.1, incorporated herein as SEQ ID NO: 3; GENBANK® Accession No. BM803172.1, incorporated herein as SEQ ID NO: 4; GENBANK® Accession No. NM_(—)002011.3, incorporated herein as SEQ ID NO: 5; GENBANK® Accession NM_(—)022963.1 incorporated herein as SEQ ID NO: 6; nucleotides 21323018 to 21335213 of GENBANK® Accession No. NT_(—)023133.11, incorporated herein as SEQ ID NO: 7; and nucleotides 8583892 to 8595932 of GENBANK® Accession No. NT_(—)023132.9, incorporated herein as SEQ ID NO: 8.

TABLE 1 Gene Targets, Synonyms and Regions SEQ ID Target Name Synonyms Species Genbank # NO fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Human AF202063.1 1 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Human AF359241.1 2 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Human BF305431.1 3 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Human BM803172.1 4 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Human NM_002011.3 5 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Human NM_022963.1 6 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Human nucleotides 7 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- 21323018 to protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 21335213 of 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 NT_023133.11 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Human nucleotides 8 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- 8583892 to protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 8595932 of 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 NT_023132.9 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Mouse AY493377.2 9 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Mouse BC033313.1 10 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Mouse BQ567109.1 11 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Mouse NM_008011.1 12 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Mouse nucleotides 13 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- 790799 to protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 800614 of 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 NT_039586.2 fibroblast growth FGF receptor-4, TKF; tyrosine kinase related to Mouse nucleotides 14 factor receptor 4 fibroblast growth factor receptor; hydroxyaryl- 792000 to protein kinase; tyrosylprotein kinase; Fgfr4; FGFR- 811000 of 4; FGFR4; CD334, FGFR4_HUMAN and JTK2 NT_039586.5

Mus musculus Nucleotide Sequences Targeted to FGFR4

Nucleotide sequences that encode Mus musculus FGFR4 include, without limitation, the following: GENBANK® Accession No. AY493377.2, incorporated herein as SEQ ID NO: 9 GENBANK® Accession No. BC033313.1, incorporated herein as SEQ ID NO: 10; GENBANK® Accession No. BQ567109.1 incorporated herein as SEQ ID NO: 11; GENBANK® Accession No. NM_(—)008011.1 incorporated herein as SEQ ID NO: 12; and nucleotides 790799 to 800614 of GENBANK® Accession No NT_(—)039586. incorporated herein as SEQ ID NO: 13; and nucleotides 792000 to 811000 of GENBANK® Accession No. NT_(—)039586.5 incorporated herein as SEQ ID NO: 14.

It is noted that some portions of these nucleotide sequences share identical sequence. Examples of such antisense compounds are shown in Table 2. In certain such embodiments, an antisense oligonucleotide targets SEQ ID NO: 9, 10, 11, 12, 13 or 14. In certain such embodiments, an antisense oligonucleotide that is targeted to any of SEQ ID NO: 9, 10, 11, 12, 13 or 14 is at least 90% complementary to the corresponding SEQ ID NO: 9, 10, 11, 12, 13 or 14. In certain such embodiments, an antisense oligonucleotide that is targeted to any of SEQ ID NO: 9, 10, 11, 12, 13 or 14 is at least 95% complementary to the corresponding SEQ ID NO: 9, 10, 11, 12, 13 or 14. In certain such embodiments, an antisense oligonucleotide that is targeted to any of SEQ ID NO: 9, 10, 11, 12, 13 or 14 is 100% complementary to the corresponding SEQ ID NO: 9, 10, 11, 12, 13 or 14. In certain embodiments, an antisense oligonucleotide targeted to any of SEQ ID NO: 9, 10, 11, 12, 13 or 14 comprises a nucleotide sequence selected from the nucleotide sequences set forth in Table 1.

In certain embodiments, gapmer antisense compounds are targeted to an FGFR4 nucleic acid of Mus musculus. In certain such embodiments, gapmer antisense compounds are targeted to SEQ ID NOs: 9, 10, 11, 12, 13 or 14. In certain such embodiments, the nucleotide sequences illustrated in Table 1 have a 5-10-5 gapmer motif Table 2 illustrates gapmer antisense compounds targeted to SEQ ID NO: 10 and 14, having a 5-10-5 motif, where the gap segment comprises 2′-deoxynucleotides and each wing segment comprises nucleotides comprising a 2′-O-methoxyethyl sugar modification. Internucleoside linkages are phosphorthioate, and cytidines are 5-methylcytidines.

TABLE 2 Nucleotide sequences targeted to Mouse (Mus musculus)  FGFR4 Sequences of SEQ ID NOs: 10 and 14 Target 5′ 3′ SEQ 2′MOE SEQ ID Target Target ID Gapmer ISIS #  NO Site Site Sequence (5′ to 3′) NO Motif 393247 10   228   247 GGGCTGGCACACTCACCCGC 15 5 10 5 393248 10   238   257 GATCCCGGCAGGGCTGGCAC 16 5 10 5 393249 10   244   263 GGTCACGATCCCGGCAGGGC 17 5 10 5 393250 10   337   356 GCCACATTTCCTTCCAGCTG 18 5 10 5 393251 10   346   365 CCAAGAGCAGCCACATTTCC 19 5 10 5 393252 10   355   374 TCAACAGGGCCAAGAGCAGC 20 5 10 5 393253 10   402   421 TTCCTCAGAGGCCTCAAGGG 21 5 10 5 393254 10   600   619 AGGAAGGAAGCTGGCGATCT 22 5 10 5 393255 10   610   629 CAGCATCCTCAGGAAGGAAG 23 5 10 5 393256 10   635   654 CCACGGGCCAGGCAGAGGTA 24 5 10 5 393257 10   644   663 GTCATGGAGCCACGGGCCAG 25 5 10 5 393258 10   682   701 AGGAGTCATCCATAAGCAAC 26 5 10 5 393259 10   687   706 GGTTAAGGAGTCATCCATAA 27 5 10 5 393260 10   694   713 TGATGGAGGTTAAGGAGTCA 28 5 10 5 393261 10   773   792 TGTGTCCAGTAGGGTGCTTG 29 5 10 5 393262 10   873   892 CCAGTGGATGGTAGGCATGG 30 5 10 5 393263 10   878   897 TTGAGCCAGTGGATGGTAGG 31 5 10 5 393264 10   996  1015 AAGGCATGTGTATGTGCCAC 32 5 10 5 393265 10  1001  1020 TCCACAAGGCATGTGTATGT 33 5 10 5 393266 10  1020  1039 AATGCTACCCAGAGAGTTCT 34 5 10 5 393267 10  1048  1067 CCAGCACATCCAGGAGATAG 35 5 10 5 299029 10   1200  1219 GCTGCTGCCGTTGATGACGA 36 5 10 5 393268 10  1245  1264 TGTTGTCTTCAGGACTTGTA 37 5 10 5 393269 10  1364  1383 AGCCACGCTGACTGGTAGGA 38 5 10 5 299036 10  1380  1399 CTCTGGCAGCACCGTGAGCC 39 5 10 5 393270 10  1446  1465 TGATACATACAGGATGATAT 40 5 10 5 393271 10  1466  1485 ACAAGCAGAACCAGTGAGCC 41 5 10 5 393272 10  1471  1490 GGAGCACAAGCAGAACCAGT 42 5 10 5 393273 10  1490  1509 TACACCCCGGCCAGCAGCAG 43 5 10 5 393274 10  1604  1623 GACTTGCCAGAGGACCTCGA 44 5 10 5 393275 10  1615  1634 GGGACAAACTTGACTTGCCA 45 5 10 5 393276 10  1625  1644 CCTCGCACCAGGGACAAACT 46 5 10 5 393277 10  1670  1689 ACAAGGCCCGTGAGCAAGGG 47 5 10 5 393278 10  1756  1775 CAAAGCAGCCCTCACCCAGG 48 5 10 5 393279 10  1775  1794 TCTGCACGAACCACTTGCCC 49 5 10 5 393280 10  1796  1815 GAGGGATCCATACCAAAGGC 50 5 10 5 393281 10  1850  1869 GAGGCATTGTCTTTCAGCAT 51 5 10 5 393282 10  1870  1889 GGTCTGCCAAATCCTTGTCG 52 5 10 5 393283 10  1910  1929 TGTCTTCCGATTAGCTTCAT 53 5 10 5 393284 10  1939  1958 AGACACCCAGCAGGTTGATG 54 5 10 5 393285 10  1945  1964 GAGTGCAGACACCCAGCAGG 55 5 10 5 393286 10  1956  1975 GGGCCCTTCCTGAGTGCAGA 56 5 10 5 393287 10  2048  2067 CCATCAGGGCTGAGATCAGG 57 5 10 5 322160 10  2131  2150 CCAGATACTGCATGCCTCGG 58 5 10 5 393288 10  2150  2169 TGGATGCACTTCCGAGACTC 59 5 10 5 393289 10  2380  2399 CCCCGAGGGTGAAGATTTCC 60 5 10 5 393290 10  2440  2459 TGTGCCCCTCTCGCAGCAGT 61 5 10 5 393291 10  2490  2509 CCTCATTAGCCCATACAGCT 62 5 10 5 393292 10  2555  2574 TTGTCCAGAGCTTCCACCAG 63 5 10 5 299052 10  2567  2586 GCCAGCAGGACCTTGTCCAG 64 5 10 5 393293 10  2580  2599 CTCTTCAGAGACAGCCAGCA 65 5 10 5 393294 10  2600  2619 GTCAGGCGGAGGTCAAGGTA 66 5 10 5 393295 10  2616  2635 AGAAAAGGGTCCAAAGGTCA 67 5 10 5 393296 10  2628  2647 CCCATTGGAGGGAGAAAAGG 68 5 10 5 393297 10  2635  2654 TGGCATCCCCATTGGAGGGA 69 5 10 5 393298 10  2641  2660 TGCTGCTGGCATCCCCATTG 70 5 10 5 393299 10  2880  2899 CAGGGCCAGAGAGAGGATCT 71 5 10 5 393300 10  2935  2954 TGGAACAGAAGGCCTCAACT 72 5 10 5 393301 10  2994  3013 CCAAGGGCAAGGCCATGATC 73 5 10 5 393302 10  3000  3019 ATGAGTCCAAGGGCAAGGCC 74 5 10 5 393303 10  3005  3024 TGAGGATGAGTCCAAGGGCA 75 5 10 5 393304 10  3085  3104 TAGAGCATAAGTTTTGCAGC 76 5 10 5 393305 10  3090  3109 ATGTTTAGAGCATAAGTTTT 77 5 10 5 393306 10  3095  3114 TAGAAATGTTTAGAGCATAA 78 5 10 5 393307 10  3120  3139 AGGCCTCTAGGTTGTTTGGG 79 5 10 5 393308 10  3277  3296 TTTATAAAAATGCCATGTTC 80 5 10 5 393310 14  3566  3585 TTCCATGCCCAGTTTGGGAC 81 5 10 5 393311 14  4800  4819 GGAGTCATTGATACCCATAG 82 5 10 5 393312 14  6049  6068 GTCAGAGTGGAGGCAGGTTA 83 5 10 5 393313 14  7448  7467 TTGATTCCCAGCAAATACAT 84 5 10 5 393314 14  7805  7824 ACCCAGCACATCCAGGAGAT 85 5 10 5 393315 14  8295  8314 CCCCACAAATGTTGCACCCA 86 5 10 5 393316 14 10349 10368 GCCCAGGTTGCCATGTGTAC 87 5 10 5 393317 14 12504 12523 GGTTTTGTTATGCATTAGAG 88 5 10 5 393318 14 14115 14134 GATCAGGAAGCATAGAAGGA 89 5 10 5 393319 14 15655 15674 GACAGTGGTGTGAGTAGTAT 90 5 10 5 393320 14 16387 16406 GAACAGGTCAAAGAGGTTTG 91 5 10 5

Human Nucleotide Sequences Targeted to FGFR4

Nucleotide sequences that encode human FGFR4 include, without limitation, the following: GENBANK® Accession No. AF202063.1, incorporated herein as SEQ ID NO: 1; GENBANK® Accession No. AF359241.1, incorporated herein as SEQ ID NO: 2; GENBANK® Accession No. BF305431.1, incorporated herein as SEQ ID NO: 3; GENBANK® Accession No. BM803172.1, incorporated herein as SEQ ID NO: 4; GENBANK® Accession No. NM_(—)002011.3, incorporated herein as SEQ ID NO: 5; GENBANK® Accession NM_(—)022963.1 incorporated herein as SEQ ID NO: 6; nucleotides 21323018 to 21335213 of GENBANK® Accession No. NT_(—)023133.11, incorporated herein as SEQ ID NO: 7; and nucleotides 8583892 to 8595932 of GENBANK® Accession No. NT_(—)023132.9, incorporated herein as SEQ ID NO: 8.

Antisense oligonucleotides with a 5-10-52′-MOE gapmer motif were designed to target human FGFR4 (Table 3). All oligonucleotides of the two series are full phosphorothioate oligonucleotides. GENBANK® Accession No. NM_(—)002011.3 represents the main mRNA which uses exons 1-18. GENBANK® Accession No. NM_(—)022963.1 represents a variant that uses exons 1-8, splices to 10a, and 11-18. Exon 10a starts at the beginning of intron 9 and ends at the end of exon 10. GENBANK® Accession No. AF202063.1 uses exons 3-8, 10a, 10-17, and intron 9. Exon 10a starts 1 nucleotide residue after Exon 8 and ends 219 nucleotide residues after. GENBANK® Accession No. NT_(—)023132.9 (nucleotide residues 8583892-8595932) represents a variant that starts with exon 1, splices to exon 1a, exons 2-4, splices to exon 4a, exons 5-9, splices to exon 10a, exons 10-18 and introns 1, splices to intron 1a, and introns 2-17. Exon 1a starts 10 nucleotide residues before Exon1 ends and ends 44 nucleotide residues after exon1 ends. Exon 4a starts at the beginning of there exon 4 starts and ends 271 nucleotide residues after exon 4. Exon 10a starts 1 nucleotide residue after exon 9 and ends 220 nucleotide residues after. Intron 1a, starts 44 nucleotide residues after the start of intron 1 and ends at the end of intron 1. GENBANK® Accession No. BM803172.1 represents a variant that uses exons 1-2, then splices to exons 4-6. GENBANK® Accession No. BF305431.1 represents a variant that uses and starts with exon 1a (ends in intron 1), splices to and uses exon 2, splices to and uses exons 4-6. GENBANK® Accession No. AF359241.1 represents a variant that begins with and uses exons 2-3, splices to and uses exon 4a (starts at the beginning of exon 4 and ends in exon 5). GENBANK® Accession No. NT_(—)023133.11 (nucleotide residues 21323018-21335213) represents a gene that starts with exon 1, splices to exon 1a, exons 2-4, splices to exon 4a, exons 5-9, splices to exon 10a, exons 10-18 and introns 1, splices to intron 1a, and introns 2-17. Exon 1a starts 10 nucleotide residues before exon1 ends and ends 44 nucleotide residues after exon 1 ends. Exon 4a starts at the beginning of there exon 4 starts and ends 271 nucleotide residues after exon 4. Exon 10a starts 1 nucleotide residue after exon 9 and ends 220 nucleotide residues after. Intron 1a, starts 44 nucleotide residues after the start of intron 1 and ends at the end of intron 1.

GENBANK® Accession No. NM_(—)002011.3 represents the genomic sequence that uses exons 2-18. The antisense oligonucleotides were selected to cover the full genomic human FGFR4 sequence.

In certain embodiments, an antisense oligonucleotide targets SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, or 8. In certain such embodiments, an antisense oligonucleotide that is targeted to any of SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, or 8 is at least 90% complementary to the corresponding SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, or 8. In certain such embodiments, an antisense oligonucleotide that is targeted to any of SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, or 8 is at least 95% complementary to the corresponding SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, or 8. In certain such embodiments, an antisense oligonucleotide that is targeted to any of SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, or 8 is 100% complementary to the corresponding SEQ ID NO: 1, 2, 3, 4, 5, 6, 7, or 8. In certain embodiments, an antisense oligonucleotide targeted to any of SEQ ID NOs: 1, 2, 3, 4, 5, 6, 7, or 8 comprises a nucleotide sequence selected from the nucleotide sequences set forth in Table 3.

In certain embodiments, gapmer antisense compounds are targeted to an FGFR4 nucleic acid. In certain such embodiments, gapmer antisense compounds are targeted to SEQ ID NOs: 1, 2, 3, 4, 5, 6, 7, or 8. In certain such embodiments, the nucleotide sequences illustrated in Table 3 have a 5-10-5 gapmer motif. Table 3 illustrates gapmer antisense compounds targeted to SEQ ID NOs: 1, 2, 3, 4, 5, 6, 7, or 8, having a 5-10-5 motif, where the gap segment comprises 2′-deoxynucleotides and each wing segment comprises nucleotides comprising a 2′-O-methoxyethyl sugar modification.

Internucleoside linkages are phosphorothioate, and cytidines are 5-methylcytidines. The following embodiments set forth target regions of Mus musculus and human FGFR4 nucleic acids. Also illustrated are examples of antisense compounds targeted to the target regions. It is understood that the sequence set forth in each SEQ ID NO is independent of any modification to a sugar moiety, an internucleoside linkage, or a nucleobase. As such, antisense compounds defined by a SEQ ID NO may comprise, independently, one or more modifications to a sugar moiety, an internucleoside linkage, or a nucleobase. Antisense compounds described by Isis Number (Isis No) indicate a combination of nucleobase sequence and motif.

Internucleoside linkages are phosphorothioate, and cytidines are 5-methylcytidines.

TABLE 3 Nucleotide sequences targeted to Human FGFR4  Sequences of SEQ ID NOs: 2, 3, 4, 5, 6 and 8 Target 5′ 3′ SEQ 2′-MOE SEQ ID Target Target ID Gapmer ISIS #  NO Site Site Sequence (5′ to 3′) NO Motif 299069 2   455   474 CAGCGGGACACAAGTCCTTG  92 5 10 5 299067 3    46    65 AACTGCCTTCCTCGAGCCTG  93 5 10 5 299065 4   306   325 GTCAAGGAGTCAAGCTCCAC  94 5 10 5 299066 4   891   910 GGTAGAGGGATGTCAACCAG  95 5 10 5 299003 5    26    45 GGCAGGGTCCGCAGACAGCC  96 5 10 5 299004 5   160   179 CAGCAGCCGCATCTCCTTCT  97 5 10 5 299005 5   192   211 GGCACACTCAGCAGGACCCC  98 5 10 5 299006 5   208   227 CAAGACTGGAGGCCCAGGCA  99 5 10 5 299007 5   254   273 GAGCCAGGCAGGGCTCAAGC 100 5 10 5 299008 5   278   297 CCTGCTCTTGCTGCTCCAGG 101 5 10 5 299009 5   289   308 TACTGTCAGCTCCTGCTCTT 102 5 10 5 299010 5   304   323 AGGCTGCCCAAGGGCTACTG 103 5 10 5 299012 5   354   373 TCCTTGTACCAGTGGCCACC 104 5 10 5 299013 5   380   399 GGCCAGCAGGTGCCAGGCGA 105 5 10 5 299014 5   412   431 AATCTCTAGGCGGCCCCTCC 106 5 10 5 299015 5   475   494 GACGATCATGGAGCCTCGTG 107 5 10 5 299016 5   483   502 TTCTGCAGGACGATCATGGA 108 5 10 5 299017 5   529   548 ATCATCGTTGCTGGAGGTCA 109 5 10 5 299018 5   597   616 GTCCAGTAGGGTGCTTGCTG 110 5 10 5 299019 5   602   621 GGTGTGTCCAGTAGGGTGCT 111 5 10 5 299020 5   627   646 TGCAGTTTCTTCTCCATGCG 112 5 10 5 299021 5   711   730 CCATCCTTAAGCCAGCGGAT 113 5 10 5 299022 5   727   746 CCCATGAAAGGCCTGTCCAT 114 5 10 5 299023 5   739   758 AATGCGGTTCTCCCCATGAA 115 5 10 5 299024 5   757   776 GCGCAGCCGAATGCCTCCAA 116 5 10 5 299025 5   785   804 TCTCCATCACGAGACTCCAG 117 5 10 5 299026 5   833   852 CGTTCTCTACCAGGCAGGTG 118 5 10 5 299027 5   964   983 CTTGCACAGCAGCTCCACGT 119 5 10 5 299028 5   969   988 TACACCTTGCACAGCAGCTC 120 5 10 5 299029 5  1027  1046  GCTGCTGCCGTTGATGACGA  36 5 10 5 299030 5  1032  1051  CCGAAGCTGCTGCCGTTGAT 121 5 10 5 299031 5  1076  1095  TGTCTGCAGTCTTTAGGACT 122 5 10 5 299032 5  1090  1109  CTCTGAGCTATTGATGTCTG 123 5 10 5 299033 5  1095  1114  TCCACCTCTGAGCTATTGAT 124 5 10 5 299034 5  1121  1140  CTGACACGTTCCGCAGGTAC 125 5 10 5 299035 5  1181  1200  ACTGGTAGGAGAGGCCGATG 126 5 10 5 299036 5  1207  1226  CTCTGGCAGCACCGTGAGCC  39 5 10 5 299037 5  1235  1254  GCGCTGCTGCGGTCCATGTG 127 5 10 5 299038 5  1326  1345  TGCCCTCGATACAGCCCGGC 128 5 10 5 299039 5  1428  1447  TTGCCGGAAGAGCCTGACTC 129 5 10 5 299040 5  1447  1466  TACCAGGGATGAGCTTGACT 130 5 10 5 299041 5  1452  1471  CCTCGTACCAGGGATGAGCT 131 5 10 5 299042 5  1555  1574  AAGCACCAGCCTGTCCCGGG 132 5 10 5 299043 5  1607  1626  AGGCCTCTGCACGTACTACC 133 5 10 5 299044 5  1656  1675  TTGACGGCCACAGTGCTGGC 134 5 10 5 299045 5  1741  1760  CTTGTGTCGGCCGATCAGCT 135 5 10 5 299046 5  1772  1791  GGGTGCAGACACCAAGCAGG 136 5 10 5 299047 5  1919  1938  AGACCAGGACTGGGAAGGAG 137 5 10 5 299048 5  1968  1987  TTCCGGGACTCCAGATACTG 138 5 10 5 299049 5  1979  1998  GGTGGATACACTTCCGGGAC 139 5 10 5 299050 5  2268  2287  CGATGTCCCTCCCGCAGCAG 140 5 10 5 299051 5  2313  2332  ATCAGCCCGTACAGCTCTGG 141 5 10 5 299052 5  2394  2413  GCCAGCAGGACCTTGTCCAG  64 5 10 5 299053 5  2416  2435  GTCGAGGTACTCCTCAGAGA 142 5 10 5 299054 5  2481  2500  CTGGAGGAGCAGGTGCTGCT 143 5 10 5 299055 5  2497  2516  GCTGAAGACAGAATCGCTGG 144 5 10 5 299056 5  2503  2522  GTCGTGGCTGAAGACAGAAT 145 5 10 5 299057 5  2557  2576  TCATGTCTGCACCCCAGACC 146 5 10 5 299058 5  2565  2584  AGCCTTGCTCATGTCTGCAC 147 5 10 5 299059 5  2629  2648  TGTGTCAGGCTGTGGCTGAG 148 5 10 5 299060 5  2698  2717  AAGGGCACGGCCCTTGGACA 149 5 10 5 299061 5  2738  2757  ATTTGGGCCATCAGGACACA 150 5 10 5 299062 5  2752  2771  AGCAGAACCCTGACATTTGG 151 5 10 5 299063 5  2851  2870  CCTGCTGGTATTGGGAGGCA 152 5 10 5 299011 6   308   327 ACAGCACAGCCGCACAGGCT 153 5 10 5 298992 6  1204  1223  CGCCCAGTACCTGGCAGCAC 154 5 10 5 299064 8   423   442 GGAGCGAGGAATGTACCCGC 155 5 10 5 299003 8   460   479 GGCAGGGTCCGCAGACAGCC  96 5 10 5 298994 8   583   602 TCCGGCTCACCTCGAGCCTG 156 5 10 5 298995 8  1913  1932 GGAAACATCCTCTCCCTCGG 157 5 10 5 299004 8  3110  3129 CAGCAGCCGCATCTCCTTCT  97 5 10 5 299005 8  3142  3161 GGCACACTCAGCAGGACCCC  98 5 10 5 299006 8  3158  3177 CAAGACTGGAGGCCCAGGCA  99 5 10 5 298996 8  3199  3218 GAAGCCATACCAAGCTCCAC 158 5 10 5 299008 8  3924  3943 CCTGCTCTTGCTGCTCCAGG 101 5 10 5 299009 8  3935  3954 TACTGTCAGCTCCTGCTCTT 102 5 10 5 299010 8  3950  3969 AGGCTGCCCAAGGGCTACTG 103 5 10 5 299012 8  4000  4019 TCCTTGTACCAGTGGCCACC 104 5 10 5 299013 8  4026  4045 GGCCAGCAGGTGCCAGGCGA 105 5 10 5 299014 8  4058  4077 AATCTCTAGGCGGCCCCTCC 106 5 10 5 299015 8  4121  4140 GACGATCATGGAGCCTCGTG 107 5 10 5 299016 8  4129  4148 TTCTGCAGGACGATCATGGA 108 5 10 5 299068 8  4174  4193 TTCACTCCCTGCTAGAGTCT 159 5 10 5 298997 8  4250  4269 GTCAAGGAGTCTACATCAGG 160 5 10 5 299017 8  4266  4285 ATCATCGTTGCTGGAGGTCA 109 5 10 5 299019 8  4451  4470 GGTGTGTCCAGTAGGGTGCT 111 5 10 5 299020 8  4476  4495 TGCAGTTTCTTCTCCATGCG 112 5 10 5 299021 8  4560  4579 CCATCCTTAAGCCAGCGGAT 113 5 10 5 299022 8  4576  4595 CCCATGAAAGGCCTGTCCAT 114 5 10 5 299023 8  4588  4607 AATGCGGTTCTCCCCATGAA 115 5 10 5 299025 8  5214  5233 TCTCCATCACGAGACTCCAG 117 5 10 5 299026 8  5262  5281 CGTTCTCTACCAGGCAGGTG 118 5 10 5 299027 8  5905  5924 CTTGCACAGCAGCTCCACGT 119 5 10 5 299028 8  5910  5929 TACACCTTGCACAGCAGCTC 120 5 10 5 299029 8  5968  5987 GCTGCTGCCGTTGATGACGA  36 5 10 5 299030 8  5973  5992 CCGAAGCTGCTGCCGTTGAT 121 5 10 5 299032 8  6165  6184 CTCTGAGCTATTGATGTCTG 123 5 10 5 299033 8  6170  6189 TCCACCTCTGAGCTATTGAT 124 5 10 5 299034 8  6196  6215 CTGACACGTTCCGCAGGTAC 125 5 10 5 299035 8  6256  6275 ACTGGTAGGAGAGGCCGATG 126 5 10 5 299037 8  6663  6682 GCGCTGCTGCGGTCCATGTG 127 5 10 5 299038 8  6754  6773 TGCCCTCGATACAGCCCGGC 128 5 10 5 298993 8  6868  6887 AGTCAGGCTGTCACATGTGA 161 5 10 5 299039 8  6930  6949 TTGCCGGAAGAGCCTGACTC 129 5 10 5 299040 8  6949  6968 TACCAGGGATGAGCTTGACT 130 5 10 5 299041 8  6954  6973 CCTCGTACCAGGGATGAGCT 131 5 10 5 299043 8  7211  7230 AGGCCTCTGCACGTACTACC 133 5 10 5 299044 8  7260  7279 TTGACGGCCACAGTGCTGGC 134 5 10 5 298998 8  7654  7673 GTGAGCCCCTTCTATTAGTC 162 5 10 5 298999 8  8267  8286 AATGTGCATTTCTCAATCCC 163 5 10 5 299045 8  8899  8918 CTTGTGTCGGCCGATCAGCT 135 5 10 5 299046 8  8930  8949 GGGTGCAGACACCAAGCAGG 136 5 10 5 299000 8  8971  8990 AACGGCCCGTGCAGCCAGCC 164 5 10 5 299047 8  9169  9188 AGACCAGGACTGGGAAGGAG 137 5 10 5 299048 8  9218  9237 TTCCGGGACTCCAGATACTG 138 5 10 5 299001 8  9863  9882 CAGGACTCACACGTCACTCT 165 5 10 5 299050 8 10204 10223 CGATGTCCCTCCCGCAGCAG 140 5 10 5 299002 8 10797 10816 CAGCCCGTACCTGCGAGAGG 166 5 10 5 299052 8 10880 10899 GCCAGCAGGACCTTGTCCAG  64 5 10 5 299054 8 11096 11115 CTGGAGGAGCAGGTGCTGCT 143 5 10 5 299055 8 11112 11131 GCTGAAGACAGAATCGCTGG 144 5 10 5 299056 8 11118 11137 GTCGTGGCTGAAGACAGAAT 145 5 10 5 299057 8 11172 11191 TCATGTCTGCACCCCAGACC 146 5 10 5 299058 8 11180 11199 AGCCTTGCTCATGTCTGCAC 147 5 10 5 299059 8 11244 11263 TGTGTCAGGCTGTGGCTGAG 148 5 10 5 299060 8 11313 11332 AAGGGCACGGCCCTTGGACA 149 5 10 5 299061 8 11353 11372 ATTTGGGCCATCAGGACACA 150 5 10 5 299062 8 11367 11386 AGCAGAACCCTGACATTTGG 151 5 10 5 299063 8 11466 11485 CCTGCTGGTATTGGGAGGCA 152 5 10 5

The following embodiments set forth target regions of human FGFR4 nucleic acids. Also illustrated are examples of antisense compounds targeted to the target regions. It is understood that the sequence set forth in each SEQ ID NO is independent of any modification to a sugar moiety, an internucleoside linkage, or a nucleobase. As such, antisense compounds defined by a SEQ ID NO may comprise, independently, one or more modifications to a sugar moiety, an internucleoside linkage, or a nucleobase. Antisense compounds described by Isis Number (Isis No) indicate a combination of nucleobase sequence and motif.

Target Regions of Human FGFR4

In certain embodiments, a target region is nucleotides 455-474 of SEQ ID NO: 2. In certain embodiments, an antisense compound is targeted to nucleotides 455-474 of SEQ ID NO: 2. In certain such embodiments, an antisense compound targeted to nucleotides 455-474 of SEQ ID NO: 2 is Isis No: 299069. In certain embodiments, an antisense compound targeted to nucleotides 455-474 of SEQ ID NO: 2 has the sequence of SEQ ID NO: 92.

In certain embodiments, a target region is nucleotides 46-65 of SEQ ID NO: 3. In certain embodiments, an antisense compound is targeted to nucleotides 46-65 of SEQ ID NO: 3. In certain such embodiments, an antisense compound targeted to nucleotides 46-65 of SEQ ID NO: 3 is Isis No: 299067. In certain embodiments, an antisense compound targeted to nucleotides 46-65 of SEQ ID NO: 3 has the sequence of SEQ ID NO: 93.

In certain embodiments, a target region is nucleotides 306-325 of SEQ ID NO: 4. In certain embodiments, an antisense compound is targeted to nucleotides 306-325 of SEQ ID NO: 4. In certain such embodiments, an antisense compound targeted to nucleotides 306-325 of SEQ ID NO: 4 is Isis No: 299065. In certain embodiments, an antisense compound targeted to nucleotides 306-325 of SEQ ID NO: 4 has the sequence of SEQ ID NO: 94.

In certain embodiments, a target region is nucleotides 891-910 of SEQ ID NO: 4. In certain embodiments, an antisense compound is targeted to nucleotides 891-910 of SEQ ID NO: 4. In certain such embodiments, an antisense compound targeted to nucleotides 891-910 of SEQ ID NO: 4 is Isis No: 299066. In certain embodiments, an antisense compound targeted to nucleotides 891-910 of SEQ ID NO: 4 has the sequence of SEQ ID NO: 95.

In certain embodiments, a target region is nucleotides 26-45 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 26-45 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 26-45 of SEQ ID NO: 5 is Isis No: 299003. In certain embodiments, an antisense compound targeted to nucleotides 26-45 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 96.

In certain embodiments, a target region is nucleotides 160-179 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 160-179 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 160-179 of SEQ ID NO: 5 is Isis No: 299004. In certain embodiments, an antisense compound targeted to nucleotides 160-179 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 97.

In certain embodiments, a target region is nucleotides 192-211 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 192-211 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 192-211 of SEQ ID NO: 5 is Isis No: 299005. In certain embodiments, an antisense compound targeted to nucleotides 192-211 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 98.

In certain embodiments, a target region is nucleotides 208-227 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 208-227 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 208-227 of SEQ ID NO: 5 is Isis No: 299006. In certain embodiments, an antisense compound targeted to nucleotides 208-227 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 99.

In certain embodiments, a target region is nucleotides 160-211 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 160-211 of SEQ ID NO: 5 is selected from Isis Nos: 299004 and 299005. In certain embodiments, an antisense compound targeted to nucleotides 160-211 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 97 or 98.

In certain embodiments, a target region is nucleotides 192-227 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 192-227 of SEQ ID NO: 5 is selected from Isis Nos: 299005 and 299006. In certain embodiments, an antisense compound targeted to nucleotides 192-227 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 98 or 99.

In certain embodiments, a target region is nucleotides 160-227 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 160-227 of SEQ ID NO: 5 is selected from Isis Nos: 299004, 299005 and 299006. In certain embodiments, an antisense compound targeted to nucleotides 160-227 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 97, 98 or 99.

In certain embodiments, a target region is nucleotides 254-273 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 254-273 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 254-273 of SEQ ID NO: 5 is Isis No: 299007. In certain embodiments, an antisense compound targeted to nucleotides 254-273 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 100.

In certain embodiments, a target region is nucleotides 278-297 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 278-297 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 278-297 of SEQ ID NO: 5 Isis No: 299008. In certain embodiments, an antisense compound targeted to nucleotides 278-297 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 101.

In certain embodiments, a target region is nucleotides 289-308 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 289-308 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 289-308 of SEQ ID NO: 5 is Isis No: 299009. In certain embodiments, an antisense compound targeted to nucleotides 289-308 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 102.

In certain embodiments, a target region is nucleotides 304-323 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 304-323 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 304-323 of SEQ ID NO: 5 is Isis No: 299010. In certain embodiments, an antisense compound targeted to nucleotides 304-323 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 103.

In certain embodiments, a target region is nucleotides 354-373 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 354-373 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 354-373 of SEQ ID NO: 5 is Isis No: 299012. In certain embodiments, an antisense compound targeted to nucleotides 354-373 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 104.

In certain embodiments, a target region is nucleotides 278-308 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 278-308 of SEQ ID NO: 5 is selected from Isis Nos: 299008 and 299009. In certain embodiments, an antisense compound targeted to nucleotides 278-308 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 101 or 102.

In certain embodiments, a target region is nucleotides 289-323 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 289-323 of SEQ ID NO: 5 is selected from Isis Nos: 299009 and 299010. In certain embodiments, an antisense compound targeted to nucleotides 289-323 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 102 or 103.

In certain embodiments, a target region is nucleotides 304-373 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 192-227 of SEQ ID NO: 5 is selected from Isis Nos: 299010 and 299012. In certain embodiments, an antisense compound targeted to nucleotides 192-227 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 103 or 104.

In certain embodiments, a target region is nucleotides 278-323 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 278-323 of SEQ ID NO: 5 is selected from Isis Nos: 299008, 299009 and 299010. In certain embodiments, an antisense compound targeted to nucleotides 278-323 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 101, 102, or 103.

In certain embodiments, a target region is nucleotides 289-373 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 289-373 of SEQ ID NO: 5 is selected from Isis Nos: 299009, 299010 and 299012. In certain embodiments, an antisense compound targeted to nucleotides 289-373 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 102, 103, or 104.

In certain embodiments, a target region is nucleotides 278-373 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 278-373 of SEQ ID NO: 5 is selected from Isis Nos: 299008, 299009, 299010 and 299012. In certain embodiments, an antisense compound targeted to nucleotides 278-373 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 101, 102, 103, or 104.

In certain embodiments, a target region is nucleotides 380-399 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 380-399 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 380-399 of SEQ ID NO: 5 is Isis No: 299013. In certain embodiments, an antisense compound targeted to nucleotides 380-399 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 105.

In certain embodiments, a target region is nucleotides 412-431 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 412-431 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 412-431 of SEQ ID NO: 5 is Isis No: 299014. In certain embodiments, an antisense compound targeted to nucleotides 412-431 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 106.

In certain embodiments, a target region is nucleotides 475-494 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 475-494 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 475-494 of SEQ ID NO: 5 is Isis No: 299015. In certain embodiments, an antisense compound targeted to nucleotides 475-494 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 107.

In certain embodiments, a target region is nucleotides 412-494 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 412-494 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 412-494 of SEQ ID NO: 5 is selected from Isis Nos: 299014 or 299015. In certain embodiments, an antisense compound targeted to nucleotides 412-494 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 106 or 107.

In certain embodiments, a target region is nucleotides 483-502 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 483-502 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 483-502 of SEQ ID NO: 5 is Isis No: 299016. In certain embodiments, an antisense compound targeted to nucleotides 483-502 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 108.

In certain embodiments, a target region is nucleotides 475-502 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 475-502 of SEQ ID NO: 5 is selected from Isis Nos: 299015 or 299016. In certain embodiments, an antisense compound targeted to nucleotides 475-502 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 107 or 108.

In certain embodiments, a target region is nucleotides 529-548 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 529-548 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 529-548 of SEQ ID NO: 5 is Isis No: 299017. In certain embodiments, an antisense compound targeted to nucleotides 529-548 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 109.

In certain embodiments, a target region is nucleotides 597-616 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 597-616 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 597-616 of SEQ ID NO: 5 is Isis No: 299018. In certain embodiments, an antisense compound targeted to nucleotides 597-616 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 110.

In certain embodiments, a target region is nucleotides 602-621 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 602-621 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 602-621 of SEQ ID NO: 5 is Isis No: 299019. In certain embodiments, an antisense compound targeted to nucleotides 602-621 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 111.

In certain embodiments, a target region is nucleotides 597-621 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 597-621 of SEQ ID NO: 5 is selected from Isis Nos: 299018 or 299019. In certain embodiments, an antisense compound targeted to nucleotides 597-621 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 110 or 111.

In certain embodiments, a target region is nucleotides 627-646 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 627-646 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 627-646 of SEQ ID NO: 5 is Isis No: 299020. In certain embodiments, an antisense compound targeted to nucleotides 627-646 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 112.

In certain embodiments, a target region is nucleotides 602-646 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 602-646 of SEQ ID NO: 5 is selected from Isis Nos: 299019 or 299020. In certain embodiments, an antisense compound targeted to nucleotides 602-646 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 111 or 112.

In certain embodiments, a target region is nucleotides 597-646 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 597-646 of SEQ ID NO: 5 is selected from Isis Nos: 299018, 299019, or 299020. In certain embodiments, an antisense compound targeted to nucleotides 597-646 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 110, 111 or 112.

In certain embodiments, a target region is nucleotides 711-730 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 711-730 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 711-730 of SEQ ID NO: 5 is Isis No: 299021. In certain embodiments, an antisense compound targeted to nucleotides 711-730 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 113.

In certain embodiments, a target region is nucleotides 727-746 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 727-746 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 727-746 of SEQ ID NO: 5 is Isis No: 299022. In certain embodiments, an antisense compound targeted to nucleotides 727-746 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 114.

In certain embodiments, a target region is nucleotides 739-758 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 739-758 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 739-758 of SEQ ID NO: 5 is Isis No: 299023. In certain embodiments, an antisense compound targeted to nucleotides 739-758 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 115.

In certain embodiments, a target region is nucleotides 757-776 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 757-776 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 757-776 of SEQ ID NO: 5 is Isis No: 299024. In certain embodiments, an antisense compound targeted to nucleotides 757-776 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 116.

In certain embodiments, a target region is nucleotides 711-746 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 711-746 of SEQ ID NO: 5 is selected from Isis Nos: 299021 and 299022. In certain embodiments, an antisense compound targeted to nucleotides 711-746 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 113 or 114.

In certain embodiments, a target region is nucleotides 727-758 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 727-758 of SEQ ID NO: 5 is selected from Isis Nos: 299022 and 299023. In certain embodiments, an antisense compound targeted to nucleotides 727-758 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 114 or 115.

In certain embodiments, a target region is nucleotides 739-758 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 739-758 of SEQ ID NO: 5 is selected from Isis Nos: 299023 and 299024. In certain embodiments, an antisense compound targeted to nucleotides 739-758 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 115 or 116.

In certain embodiments, a target region is nucleotides 711-758 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 711-758 of SEQ ID NO: 5 is selected from Isis Nos: 299021, 299022 and 299023. In certain embodiments, an antisense compound targeted to nucleotides 711-758 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 113, 114, or 115.

In certain embodiments, a target region is nucleotides 727-776 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 727-776 of SEQ ID NO: 5 is selected from Isis Nos: 299022, 299023 and 299024. In certain embodiments, an antisense compound targeted to nucleotides 727-776 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 114, 115, or 116.

In certain embodiments, a target region is nucleotides 711-776 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 711-776 of SEQ ID NO: 5 is selected from Isis Nos: 299021, 299022, 299023 and 299024. In certain embodiments, an antisense compound targeted to nucleotides 711-776 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 113, 114, 115, or 116.

In certain embodiments, a target region is nucleotides 785-804 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 785-804 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 785-804 of SEQ ID NO: 5 is Isis No: 299025. In certain embodiments, an antisense compound targeted to nucleotides 785-804 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 117.

In certain embodiments, a target region is nucleotides 833-852 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 833-852 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 833-852 of SEQ ID NO: 5 is Isis No: 299026. In certain embodiments, an antisense compound targeted to nucleotides 833-852 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 118.

In certain embodiments, a target region is nucleotides 964-983 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 964-983 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 964-983 of SEQ ID NO: 5 is Isis No: 299027. In certain embodiments, an antisense compound targeted to nucleotides 964-983 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 119.

In certain embodiments, a target region is nucleotides 969-988 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 969-988 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 969-988 of SEQ ID NO: 5 is Isis No: 299028. In certain embodiments, an antisense compound targeted to nucleotides 969-988 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 120.

In certain embodiments, a target region is nucleotides 785-852 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 785-852 of SEQ ID NO: 5 is selected from Isis Nos: 299025 and 299026. In certain embodiments, an antisense compound targeted to nucleotides 785-852 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 117 or 118.

In certain embodiments, a target region is nucleotides 833-983 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 833-983 of SEQ ID NO: 5 is selected from Isis Nos: 299026 and 299027. In certain embodiments, an antisense compound targeted to nucleotides 833-983 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 118 or 119.

In certain embodiments, a target region is nucleotides 964-988 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 964-988 of SEQ ID NO: 5 is selected from Isis Nos: 299027 and 299028. In certain embodiments, an antisense compound targeted to nucleotides 964-988 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 119 or 120.

In certain embodiments, a target region is nucleotides 785-983 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 785-983 of SEQ ID NO: 5 is selected from Isis Nos: 299025, 299026 and 299027. In certain embodiments, an antisense compound targeted to nucleotides 785-983 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 117, 118, or 119.

In certain embodiments, a target region is nucleotides 833-988 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 833-988 of SEQ ID NO: 5 is selected from Isis Nos: 299026, 299027 and 299028. In certain embodiments, an antisense compound targeted to nucleotides 833-988 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 118, 119, or 120.

In certain embodiments, a target region is nucleotides 785-988 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 785-988 of SEQ ID NO: 5 is selected from Isis Nos: 299025, 299026, 299027 and 299028. In certain embodiments, an antisense compound targeted to nucleotides 785-988 of SEQ ID NO: 5 has the sequence of SEQ ID NOs: 117, 118, 119, or 120.

In certain embodiments, a target region is nucleotides 1027-1046 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1027-1046 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1027-1046 of SEQ ID NO: 5 is Isis No: 299029. In certain embodiments, an antisense compound targeted to nucleotides 1027-1046 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 36.

In certain embodiments, a target region is nucleotides 1032-1051 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1032-1051 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1032-1051 of SEQ ID NO: 5 is Isis No: 299030. In certain embodiments, an antisense compound targeted to nucleotides 1032-1051 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 121.

In certain embodiments, a target region is nucleotides 1027-1051 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1027-1051 of SEQ ID NO: 5 is selected from Isis Nos: 299029 or 299030. In certain embodiments, an antisense compound targeted to nucleotides 1027-1051 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 36 or 121.

In certain embodiments, a target region is nucleotides 1076-1095 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1076-1095 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1076-1095 of SEQ ID NO: 5 is Isis No: 299031. In certain embodiments, an antisense compound targeted to nucleotides 1076-1095 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 122.

In certain embodiments, a target region is nucleotides 1090-1109 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1090-1109 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1090-1109 of SEQ ID NO: 5 is Isis No: 299032. In certain embodiments, an antisense compound targeted to nucleotides 1090-1109 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 123.

In certain embodiments, a target region is nucleotides 1076-1109 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1076-1109 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1076-1109 of SEQ ID NO: 5 is selected from Isis Nos: 299031 or 299032. In certain embodiments, an antisense compound targeted to nucleotides 1076-1109 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 122 or 123

In certain embodiments, a target region is nucleotides 1095-1114 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1095-1114 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1095-1114 of SEQ ID NO: 5 is Isis No: 299033. In certain embodiments, an antisense compound targeted to nucleotides 1095-1114 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 124.

In certain embodiments, a target region is nucleotides 1121-1140 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1121-1140 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1121-1140 of SEQ ID NO: 5 is Isis No: 299034. In certain embodiments, an antisense compound targeted to nucleotides 1121-1140 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 125.

In certain embodiments, a target region is nucleotides 1181-1200 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1181-1200 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1181-1200 of SEQ ID NO: 5 is Isis No: 299035. In certain embodiments, an antisense compound targeted to nucleotides 1181-1200 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 126.

In certain embodiments, a target region is nucleotides 1207-1226 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1207-1226 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1207-1226 of SEQ ID NO: 5 is Isis No: 299036. In certain embodiments, an antisense compound targeted to nucleotides 1207-1226 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 39.

In certain embodiments, a target region is nucleotides 1121-1200 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1121-1200 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1121-1200 of SEQ ID NO: 5 is selected from Isis Nos: 299034 or 299035. In certain embodiments, an antisense compound targeted to nucleotides 1121-1200 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 125 or 126.

In certain embodiments, a target region is nucleotides 1181-1226 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1181-1226 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1181-1226 of SEQ ID NO: 5 is selected from Isis Nos: 299035 or 299036. In certain embodiments, an antisense compound targeted to nucleotides 1181-1226 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 126 or 39.

In certain embodiments, a target region is nucleotides 1121-1226 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1121-1226 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1121-1226 of SEQ ID NO: 5 is selected from Isis Nos: 299034, 299035 or 299036. In certain embodiments, an antisense compound targeted to nucleotides 1121-1226 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 125, 126 or 39.

In certain embodiments, a target region is nucleotides 1235-1254 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1235-1254 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1235-1254 of SEQ ID NO: 5 is Isis No: 299037. In certain embodiments, an antisense compound targeted to nucleotides 1235-1254 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 127.

In certain embodiments, a target region is nucleotides 1326-1345 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1326-1345 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1326-1345 of SEQ ID NO: 5 is Isis No: 299038. In certain embodiments, an antisense compound targeted to nucleotides 1326-1345 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 128.

In certain embodiments, a target region is nucleotides 1235-1345 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1235-1345 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1235-1345 of SEQ ID NO: 5 is selected from Isis Nos: 299037 or 299038. In certain embodiments, an antisense compound targeted to nucleotides 1235-1345 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 127 or 128.

In certain embodiments, a target region is nucleotides 1428-1447 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1428-1447 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1428-1447 of SEQ ID NO: 5 is Isis No: 299039. In certain embodiments, an antisense compound targeted to nucleotides 1428-1447 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 129.

In certain embodiments, a target region is nucleotides 1447-1466 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1447-1466 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1447-1466 of SEQ ID NO: 5 is Isis No: 299040. In certain embodiments, an antisense compound targeted to nucleotides 1447-1466 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 130.

In certain embodiments, a target region is nucleotides 1452-1471 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1452-1471 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1452-1471 of SEQ ID NO: 5 is Isis No: 299041. In certain embodiments, an antisense compound targeted to nucleotides 1452-1471 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 131.

In certain embodiments, a target region is nucleotides 1428-1466 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1428-1466 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1428-1466 of SEQ ID NO: 5 is selected from Isis Nos: 299039 or 299040. In certain embodiments, an antisense compound targeted to nucleotides 1428-1466 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 129 or 130.

In certain embodiments, a target region is nucleotides 1447-1471 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1447-1471 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1447-1471 of SEQ ID NO: 5 is selected from Isis Nos: 299040 or 299041. In certain embodiments, an antisense compound targeted to nucleotides 1447-1471 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 130 or 131.

In certain embodiments, a target region is nucleotides 1428-1471 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1428-1471 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1428-1471 of SEQ ID NO: 5 is selected from Isis Nos: 299039, 299040 or 299041. In certain embodiments, an antisense compound targeted to nucleotides 1428-1471 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 129, 130 or 131.

In certain embodiments, a target region is nucleotides 1555-1574 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1555-1574 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1555-1574 of SEQ ID NO: 5 is Isis No: 299042. In certain embodiments, an antisense compound targeted to nucleotides 1555-1574 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 132.

In certain embodiments, a target region is nucleotides 1607-1626 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1607-1626 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1607-1626 of SEQ ID NO: 5 is Isis No: 299043. In certain embodiments, an antisense compound targeted to nucleotides 1607-1626 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 133.

In certain embodiments, a target region is nucleotides 1656-1675 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1656-1675 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1656-1675 of SEQ ID NO: 5 is Isis No: 299044. In certain embodiments, an antisense compound targeted to nucleotides 1656-1675 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 134.

In certain embodiments, a target region is nucleotides 1555-1626 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1555-1626 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1555-1626 of SEQ ID NO: 5 is selected from Isis Nos: 299042 or 299043. In certain embodiments, an antisense compound targeted to nucleotides 1555-1626 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 132 or 133.

In certain embodiments, a target region is nucleotides 1607-1675 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1607-1675 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1607-1675 of SEQ ID NO: 5 is selected from Isis Nos: 299043 or 299044. In certain embodiments, an antisense compound targeted to nucleotides 1607-1675 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 133 or 134.

In certain embodiments, a target region is nucleotides 1555-1675 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1555-1675 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1555-1675 of SEQ ID NO: 5 is selected from Isis Nos: 299042, 299043 or 299044. In certain embodiments, an antisense compound targeted to nucleotides 1555-1675 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 132, 133 or 134.

In certain embodiments, a target region is nucleotides 1326-1675 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1326-1675 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1326-1675 of SEQ ID NO: 5 is selected from Isis Nos: 299038, 299039, 299040, 299041, 299042, 299043 or 299044. In certain embodiments, an antisense compound targeted to nucleotides 1326-1675 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 128, 129, 130, 131, 132, 133 or 134.

In certain embodiments, a target region is nucleotides 1741-1760 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1741-1760 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1741-1760 of SEQ ID NO: 5 is Isis No: 299045. In certain embodiments, an antisense compound targeted to nucleotides 1741-1760 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 135.

In certain embodiments, a target region is nucleotides 1772-1791 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1772-1791 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1772-1791 of SEQ ID NO: 5 is Isis No: 299046. In certain embodiments, an antisense compound targeted to nucleotides 1772-1791 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 136.

In certain embodiments, a target region is nucleotides 1919-1938 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1919-1938 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1919-1938 of SEQ ID NO: 5 is Isis No: 299047. In certain embodiments, an antisense compound targeted to nucleotides 1919-1938 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 137.

In certain embodiments, a target region is nucleotides 1968-1987 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1968-1987 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1968-1987 of SEQ ID NO: 5 is Isis No: 299048. In certain embodiments, an antisense compound targeted to nucleotides 1968-1987 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 138.

In certain embodiments, a target region is nucleotides 1979-1998 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1979-1998 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1979-1998 of SEQ ID NO: 5 is Isis No: 299049. In certain embodiments, an antisense compound targeted to nucleotides 1979-1998 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 139.

In certain embodiments, a target region is nucleotides 1968-1998 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 1968-1998 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 1968-1998 of SEQ ID NO: 5 is Isis No: 299048 or 299049. In certain embodiments, an antisense compound targeted to nucleotides 1968-1998 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 138 or 139.

In certain embodiments, a target region is nucleotides 2268-2287 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2268-2287 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2268-2287 of SEQ ID NO: 5 is Isis No: 299050. In certain embodiments, an antisense compound targeted to nucleotides 2268-2287 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 140.

In certain embodiments, a target region is nucleotides 2313-2332 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2313-2332 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2313-2332 of SEQ ID NO: 5 is Isis No: 299051. In certain embodiments, an antisense compound targeted to nucleotides 2313-2332 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 141.

In certain embodiments, a target region is nucleotides 2394-2413 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2394-2413 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2394-2413 of SEQ ID NO: 5 is Isis No: 299052. In certain embodiments, an antisense compound targeted to nucleotides 2394-2413 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 64.

In certain embodiments, a target region is nucleotides 2416-2435 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2416-2435 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2416-2435 of SEQ ID NO: 5 is Isis No: 299053. In certain embodiments, an antisense compound targeted to nucleotides 2416-2435 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 142.

In certain embodiments, a target region is nucleotides 2481-2500 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2481-2500 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2481-2500 of SEQ ID NO: 5 is Isis No: 299054. In certain embodiments, an antisense compound targeted to nucleotides 2481-2500 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 143.

In certain embodiments, a target region is nucleotides 2497-2516 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2497-2516 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2497-2516 of SEQ ID NO: 5 is Isis No: 299055. In certain embodiments, an antisense compound targeted to nucleotides 2497-2516 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 144.

In certain embodiments, a target region is nucleotides 2503-2522 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2503-2522 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2503-2522 of SEQ ID NO: 5 is Isis No: 299056. In certain embodiments, an antisense compound targeted to nucleotides 2503-2522 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 145.

In certain embodiments, a target region is nucleotides 2557-2576 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2557-2576 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2557-2576 of SEQ ID NO: 5 is Isis No: 299057. In certain embodiments, an antisense compound targeted to nucleotides 2557-2576 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 146.

In certain embodiments, a target region is nucleotides 2565-2584 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2565-2584 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2565-2584 of SEQ ID NO: 5 is Isis No: 299058. In certain embodiments, an antisense compound targeted to nucleotides 2565-2584 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 147.

In certain embodiments, a target region is nucleotides 2629-2648 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2629-2648 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2629-2648 of SEQ ID NO: 5 is Isis No: 299059. In certain embodiments, an antisense compound targeted to nucleotides 2629-2648 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 148.

In certain embodiments, a target region is nucleotides 2698-2717 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2698-2717 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2698-2717 of SEQ ID NO: 5 is Isis No: 299060. In certain embodiments, an antisense compound targeted to nucleotides 2698-2717 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 149.

In certain embodiments, a target region is nucleotides 2738-2757 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2738-2757 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2738-2757 of SEQ ID NO: 5 is Isis No: 299061. In certain embodiments, an antisense compound targeted to nucleotides 2738-2757 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 150.

In certain embodiments, a target region is nucleotides 2752-2771 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2752-2771 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2752-2771 of SEQ ID NO: 5 is Isis No: 299062. In certain embodiments, an antisense compound targeted to nucleotides 2752-2771 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 151.

In certain embodiments, a target region is nucleotides 2851-2870 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2851-2870 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2851-2870 of SEQ ID NO: 5 is Isis No: 299063. In certain embodiments, an antisense compound targeted to nucleotides 2851-2870 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 152.

In certain embodiments, a target region is nucleotides 2497-2584 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2497-2584 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2497-2584 of SEQ ID NO: 5 is selected from Isis Nos: 299055, 299056, 299057, or 299058. In certain embodiments, an antisense compound targeted to nucleotides 2497-2584 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 144, 145, 146, or 147.

In certain embodiments, a target region is nucleotides 2738-2870 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2738-2870 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2738-2870 of SEQ ID NO: 5 is selected from Isis Nos: 299061, 299062, or 299063. In certain embodiments, an antisense compound targeted to nucleotides 2738-2870 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 150, 151, or 152.

In certain embodiments, a target region is nucleotides 2497-2870 of SEQ ID NO: 5. In certain embodiments, an antisense compound is targeted to nucleotides 2497-2870 of SEQ ID NO: 5. In certain such embodiments, an antisense compound targeted to nucleotides 2497-2870 of SEQ ID NO: 5 is selected from Isis Nos: 299055, 299056, 299057, 299058, 299059, 299060, 299061, 299062, or 299063. In certain embodiments, an antisense compound targeted to nucleotides 2497-2870 of SEQ ID NO: 5 has the sequence of SEQ ID NO: 144, 145, 146, 147, 148, 149, 150, 151, or 152.

In certain embodiments, a target region is nucleotides 308-327 of SEQ ID NO: 6. In certain embodiments, an antisense compound is targeted to nucleotides 308-327 of SEQ ID NO: 6. In certain such embodiments, an antisense compound targeted to nucleotides 308-327 of SEQ ID NO: 6 is Isis No: 299011. In certain embodiments, an antisense compound targeted to nucleotides 308-327 of SEQ ID NO: has the sequence of SEQ ID NO: 153.

In certain embodiments, a target region is nucleotides 1204-1223 of SEQ ID NO: 6. In certain embodiments, an antisense compound is targeted to nucleotides 1204-1223 of SEQ ID NO: 6. In certain such embodiments, an antisense compound targeted to nucleotides 1204-1223 of SEQ ID NO: 6 is Isis No: 298992. In certain embodiments, an antisense compound targeted to nucleotides 1204-1223 of SEQ ID NO: has the sequence of SEQ ID NO: 154.

In certain embodiments, a target region is nucleotides 423-442 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 423-442 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 423-442 of SEQ ID NO: 8 is Isis No: 299064. In certain embodiments, an antisense compound targeted to nucleotides 423-442 of SEQ ID NO: has the sequence of SEQ ID NO: 155.

In certain embodiments, a target region is nucleotides 460-479 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 460-479 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 460-479 of SEQ ID NO: 8 is Isis No: 299003. In certain embodiments, an antisense compound targeted to nucleotides 460-479 of SEQ ID NO: has the sequence of SEQ ID NO: 96.

In certain embodiments, a target region is nucleotides 583-602 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 583-602 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 583-602 of SEQ ID NO: 8 is Isis No: 298994. In certain embodiments, an antisense compound targeted to nucleotides 583-602 of SEQ ID NO: has the sequence of SEQ ID NO: 156.

In certain embodiments, a target region is nucleotides 1913-1932 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 1913-1932 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 1913-1932 of SEQ ID NO: 8 is Isis No: 298995. In certain embodiments, an antisense compound targeted to nucleotides 1913-1932 of SEQ ID NO: has the sequence of SEQ ID NO: 157.

In certain embodiments, a target region is nucleotides 3110-3129 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 3110-3129 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 3110-3129 of SEQ ID NO: 8 is Isis No: 299004. In certain embodiments, an antisense compound targeted to nucleotides 3110-3129 of SEQ ID NO: has the sequence of SEQ ID NO: 97.

In certain embodiments, a target region is nucleotides 3142-3161 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 3142-3161 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 3142-3161 of SEQ ID NO: 8 is Isis No: 299005. In certain embodiments, an antisense compound targeted to nucleotides 3142-3161 of SEQ ID NO: has the sequence of SEQ ID NO: 98.

In certain embodiments, a target region is nucleotides 3158-3177 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 3158-3177 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 3158-3177 of SEQ ID NO: 8 is Isis No: 299006. In certain embodiments, an antisense compound targeted to nucleotides 3158-3177 of SEQ ID NO: has the sequence of SEQ ID NO: 99.

In certain embodiments, a target region is nucleotides 3199-3218 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 3199-3218 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 3199-3218 of SEQ ID NO: 8 is Isis No: 298996. In certain embodiments, an antisense compound targeted to nucleotides 3199-3218 of SEQ ID NO: has the sequence of SEQ ID NO: 158.

In certain embodiments, a target region is nucleotides 3924-3943 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 3924-3943 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 3924-3943 of SEQ ID NO: 8 is Isis No: 299008. In certain embodiments, an antisense compound targeted to nucleotides 3924-3943 of SEQ ID NO: has the sequence of SEQ ID NO: 101.

In certain embodiments, a target region is nucleotides 3935-3954 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 3935-3954 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 3935-3954 of SEQ ID NO: 8 is Isis No: 299009. In certain embodiments, an antisense compound targeted to nucleotides 3935-3954 of SEQ ID NO: has the sequence of SEQ ID NO: 102.

In certain embodiments, a target region is nucleotides 3950-3969 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 3950-3969 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 3950-3969 of SEQ ID NO: 8 is Isis No: 2990010. In certain embodiments, an antisense compound targeted to nucleotides 3950-3969 of SEQ ID NO: has the sequence of SEQ ID NO: 103.

In certain embodiments, a target region is nucleotides 3924-3954 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 3924-3954 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 3924-3954 of SEQ ID NO: 8 is selected from Isis Nos: 299008 or 299009. In certain embodiments, an antisense compound targeted to nucleotides 3924-3954 of SEQ ID NO: has the sequence of SEQ ID NO: 101 or 102.

In certain embodiments, a target region is nucleotides 3935-3969 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 3935-3969 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 3935-3969 of SEQ ID NO: 8 is selected from Isis Nos: 299009 or 299010. In certain embodiments, an antisense compound targeted to nucleotides 3935-3969 of SEQ ID NO: has the sequence of SEQ ID NO: 102 or 103.

In certain embodiments, a target region is nucleotides 3924-3969 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 3924-3969 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 3924-3969 of SEQ ID NO: 8 is selected from Isis Nos: 299008, 299009 or 299010. In certain embodiments, an antisense compound targeted to nucleotides 3924-3969 of SEQ ID NO: has the sequence of SEQ ID NO: 101, 102 or 103.

In certain embodiments, a target region is nucleotides 4000-4019 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4000-4019 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4000-4019 of SEQ ID NO: 8 is Isis No: 299012. In certain embodiments, an antisense compound targeted to nucleotides 4000-4019 of SEQ ID NO: has the sequence of SEQ ID NO: 104.

In certain embodiments, a target region is nucleotides 4026-4045 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4026-4045 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4026-4045 of SEQ ID NO: 8 is Isis No: 299013. In certain embodiments, an antisense compound targeted to nucleotides 4026-4045 of SEQ ID NO: has the sequence of SEQ ID NO: 105.

In certain embodiments, a target region is nucleotides 4058-4077 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4058-4077 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4058-4077 of SEQ ID NO: 8 is Isis No: 299014. In certain embodiments, an antisense compound targeted to nucleotides 4058-4077 of SEQ ID NO: has the sequence of SEQ ID NO: 106.

In certain embodiments, a target region is nucleotides 4121-4140 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4121-4140 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4121-4140 of SEQ ID NO: 8 is Isis No: 299015. In certain embodiments, an antisense compound targeted to nucleotides 4121-4140 of SEQ ID NO: has the sequence of SEQ ID NO: 107.

In certain embodiments, a target region is nucleotides 4129-4148 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4129-4148 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4129-4148 of SEQ ID NO: 8 is Isis No: 299016. In certain embodiments, an antisense compound targeted to nucleotides 4129-4148 of SEQ ID NO: has the sequence of SEQ ID NO: 108.

In certain embodiments, a target region is nucleotides 4121-4148 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4121-4148 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4121-4148 of SEQ ID NO: 8 is selected from Isis Nos: 299015 or 299016. In certain embodiments, an antisense compound targeted to nucleotides 4121-4148 of SEQ ID NO: has the sequence of SEQ ID NO: 107 or 108.

In certain embodiments, a target region is nucleotides 4058-4148 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4058-4148 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4058-4148 of SEQ ID NO: 8 is selected from Isis Nos: 299014, 299015 or 299016. In certain embodiments, an antisense compound targeted to nucleotides 4058-4148 of SEQ ID NO: has the sequence of SEQ ID NO: 106, 107 or 108.

In certain embodiments, a target region is nucleotides 4174-4193 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4174-4193 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4174-4193 of SEQ ID NO: 8 is Isis No: 299068. In certain embodiments, an antisense compound targeted to nucleotides 4174-4193 of SEQ ID NO: has the sequence of SEQ ID NO: 159.

In certain embodiments, a target region is nucleotides 4250-4269 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4250-4269 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4250-4269 of SEQ ID NO: 8 is Isis No: 298997. In certain embodiments, an antisense compound targeted to nucleotides 4250-4269 of SEQ ID NO: has the sequence of SEQ ID NO: 160.

In certain embodiments, a target region is nucleotides 4266-4285 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4266-4285 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4266-4285 of SEQ ID NO: 8 is Isis No: 299017. In certain embodiments, an antisense compound targeted to nucleotides 4266-4285 of SEQ ID NO: has the sequence of SEQ ID NO: 109.

In certain embodiments, a target region is nucleotides 4174-4285 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4174-4285 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4174-4285 of SEQ ID NO: 8 is selected from Isis Nos: 299068, 298997, or 299017. In certain embodiments, an antisense compound targeted to nucleotides 4174-4285 of SEQ ID NO: has the sequence of SEQ ID NO: 159, 160, or 109.

In certain embodiments, a target region is nucleotides 4058-4285 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4058-4285 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4058-4285 of SEQ ID NO: 8 is selected from Isis Nos: 2999014, 299015, 299016, 299068, 298997, or 299017. In certain embodiments, an antisense compound targeted to nucleotides 4058-4285 of SEQ ID NO: has the sequence of SEQ ID NO: 106, 107, 108, 159, 160, or 109.

In certain embodiments, a target region is nucleotides 4451-4470 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4451-4470 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4451-4470 of SEQ ID NO: 8 is Isis No: 299019. In certain embodiments, an antisense compound targeted to nucleotides 4451-4470 of SEQ ID NO: has the sequence of SEQ ID NO: 111.

In certain embodiments, a target region is nucleotides 4476-4495 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4476-4495 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4476-4495 of SEQ ID NO: 8 is Isis No: 299020. In certain embodiments, an antisense compound targeted to nucleotides 4476-4495 of SEQ ID NO: has the sequence of SEQ ID NO: 112.

In certain embodiments, a target region is nucleotides 4560-4579 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4560-4579 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4560-4579 of SEQ ID NO: 8 is Isis No: 299021. In certain embodiments, an antisense compound targeted to nucleotides 4560-4579 of SEQ ID NO: has the sequence of SEQ ID NO: 113.

In certain embodiments, a target region is nucleotides 4576-4595 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4576-4595 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4576-4595 of SEQ ID NO: 8 is Isis No: 299022. In certain embodiments, an antisense compound targeted to nucleotides 4576-4595 of SEQ ID NO: has the sequence of SEQ ID NO: 114.

In certain embodiments, a target region is nucleotides 4588-4607 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4588-4607 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4588-4607 of SEQ ID NO: 8 is Isis No: 299023. In certain embodiments, an antisense compound targeted to nucleotides 4588-4607 of SEQ ID NO: has the sequence of SEQ ID NO: 115.

In certain embodiments, a target region is nucleotides 4560-4595 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4560-4595 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4560-4595 of SEQ ID NO: 8 is selected from Isis Nos: 299021 or 299022. In certain embodiments, an antisense compound targeted to nucleotides 4560-4595 of SEQ ID NO: has the sequence of SEQ ID NO: 113 or 114.

In certain embodiments, a target region is nucleotides 4576-4607 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4576-4607 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4576-4607 of SEQ ID NO: 8 is selected from Isis Nos: 299022 or 299023. In certain embodiments, an antisense compound targeted to nucleotides 4576-4607 of SEQ ID NO: has the sequence of SEQ ID NO: 114 or 115.

In certain embodiments, a target region is nucleotides 4560-4607 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 4560-4607 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 4560-4607 of SEQ ID NO: 8 is selected from Isis Nos: 299021, 299022, or 299023. In certain embodiments, an antisense compound targeted to nucleotides 4560-4607 of SEQ ID NO: has the sequence of SEQ ID NO: 113, 114, OR 115.

In certain embodiments, a target region is nucleotides 5214-5233 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5214-5233 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5214-5233 of SEQ ID NO: 8 is Isis No: 299025. In certain embodiments, an antisense compound targeted to nucleotides 5214-5233 of SEQ ID NO: has the sequence of SEQ ID NO: 117.

In certain embodiments, a target region is nucleotides 5262-5281 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5262-5281 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5262-5281 of SEQ ID NO: 8 is Isis No: 299026. In certain embodiments, an antisense compound targeted to nucleotides 5262-5281 of SEQ ID NO: has the sequence of SEQ ID NO: 118.

In certain embodiments, a target region is nucleotides 5214-5281 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5214-5281 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5214-5281 of SEQ ID NO: 8 is selected from Isis Nos: 299025 or 299026. In certain embodiments, an antisense compound targeted to nucleotides 5214-5281 of SEQ ID NO: has the sequence of SEQ ID NO: 117 or 118.

In certain embodiments, a target region is nucleotides 5905-5924 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5905-5924 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5905-5924 of SEQ ID NO: 8 is Isis No: 299027. In certain embodiments, an antisense compound targeted to nucleotides 5905-5924 of SEQ ID NO: has the sequence of SEQ ID NO: 119.

In certain embodiments, a target region is nucleotides 5910-5929 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5910-5929 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5910-5929 of SEQ ID NO: 8 is Isis No: 299028. In certain embodiments, an antisense compound targeted to nucleotides 5910-5929 of SEQ ID NO: has the sequence of SEQ ID NO: 120.

In certain embodiments, a target region is nucleotides 5905-5929 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5905-5929 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5905-5929 of SEQ ID NO: 8 is Isis Nos 299027 or 299028. In certain embodiments, an antisense compound targeted to nucleotides 5905-5929 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 119 or 120.

In certain embodiments, a target region is nucleotides 5968-5987 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5968-5987 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5968-5987 of SEQ ID NO: 8 is Isis No: 299029. In certain embodiments, an antisense compound targeted to nucleotides 5968-5987 of SEQ ID NO: has the sequence of SEQ ID NO: 36.

In certain embodiments, a target region is nucleotides 5910-5987 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5910-5987 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5910-5987 of SEQ ID NO: 8 is Isis Nos 299028 or 299029. In certain embodiments, an antisense compound targeted to nucleotides 5910-5987 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 120 or 36.

In certain embodiments, a target region is nucleotides 5905-5987 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5905-5987 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5905-5987 of SEQ ID NO: 8 is Isis Nos 299027, 299028 or 299029. In certain embodiments, an antisense compound targeted to nucleotides 5905-5987 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 119, 120 or 36.

In certain embodiments, a target region is nucleotides 5973-5992 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5973-5992 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5973-5992 of SEQ ID NO: 8 is Isis No: 299030. In certain embodiments, an antisense compound targeted to nucleotides 5973-5992 of SEQ ID NO: has the sequence of SEQ ID NO: 121.

In certain embodiments, a target region is nucleotides 5968-5992 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5968-5992 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5968-5992 SEQ ID NO: 8 is Isis Nos 299029 or 299030. In certain embodiments, an antisense compound targeted to nucleotides 5968-5992 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 36 or 121.

In certain embodiments, a target region is nucleotides 5910-5992 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5910-5992 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5910-5992 of SEQ ID NO: 8 is Isis Nos 299028, 299029 or 299030. In certain embodiments, an antisense compound targeted to nucleotides 5910-5992 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 120, 36 or 121.

In certain embodiments, a target region is nucleotides 5905-5992 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 5905-5992 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 5905-5992 of SEQ ID NO: 8 is Isis Nos 299027, 299028, 299029 or 299030. In certain embodiments, an antisense compound targeted to nucleotides 5905-5992 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 119, 120, 36 or 121.

In certain embodiments, a target region is nucleotides 6165-6184 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6165-6184 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6165-6184 of SEQ ID NO: 8 is Isis No: 299032. In certain embodiments, an antisense compound targeted to nucleotides 6165-6184 of SEQ ID NO: has the sequence of SEQ ID NO: 123.

In certain embodiments, a target region is nucleotides 6170-6189 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6170-6189 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6170-6189 of SEQ ID NO: 8 is Isis No: 299033. In certain embodiments, an antisense compound targeted to nucleotides 6170-6189 of SEQ ID NO: has the sequence of SEQ ID NO: 124.

In certain embodiments, a target region is nucleotides 6165-6189 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6165-6189 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6165-6189 of SEQ ID NO: 8 is Isis Nos: 299032 or 299033. In certain embodiments, an antisense compound targeted to nucleotides 6165-6189 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 123 or 124.

In certain embodiments, a target region is nucleotides 6196-6215 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6196-6215 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6196-6215 of SEQ ID NO: 8 is Isis No: 299034. In certain embodiments, an antisense compound targeted to nucleotides 6196-6215 of SEQ ID NO: has the sequence of SEQ ID NO: 125.

In certain embodiments, a target region is nucleotides 6170-6215 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6170-6215 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6170-6215 of SEQ ID NO: 8 is selected from Isis Nos: 299033 or 299034. In certain embodiments, an antisense compound targeted to nucleotides 6170-6215 of SEQ ID NO: has the sequence of SEQ ID NO: 124 or 125.

In certain embodiments, a target region is nucleotides 6165-6215 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6165-6215 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6165-6215 of SEQ ID NO: 8 is selected from Isis Nos: 299032, 299033, or 299034. In certain embodiments, an antisense compound targeted to nucleotides 6165-6215 of SEQ ID NO: has the sequence of SEQ ID NO: 123, 124, or 125.

In certain embodiments, a target region is nucleotides 6256-6275 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6256-6275 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6256-6275 of SEQ ID NO: 8 is Isis No: 299035. In certain embodiments, an antisense compound targeted to nucleotides 6256-6275 of SEQ ID NO: has the sequence of SEQ ID NO: 126.

In certain embodiments, a target region is nucleotides 6663-6682 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6663-6682 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6663-6682 of SEQ ID NO: 8 is Isis No: 299037. In certain embodiments, an antisense compound targeted to nucleotides 6663-6682 of SEQ ID NO: has the sequence of SEQ ID NO: 127.

In certain embodiments, a target region is nucleotides 6754-6773 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6754-6773 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6754-6773 of SEQ ID NO: 8 is Isis No: 299038. In certain embodiments, an antisense compound targeted to nucleotides 6754-6773 of SEQ ID NO: has the sequence of SEQ ID NO: 128.

In certain embodiments, a target region is nucleotides 6868-6887 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6868-6887 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6868-6887 of SEQ ID NO: 8 is Isis No: 298993. In certain embodiments, an antisense compound targeted to nucleotides 6868-6887 of SEQ ID NO: has the sequence of SEQ ID NO: 161.

In certain embodiments, a target region is nucleotides 6930-6949 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6930-6949 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6930-6949 of SEQ ID NO: 8 is Isis No: 299039. In certain embodiments, an antisense compound targeted to nucleotides 6930-6949 of SEQ ID NO: has the sequence of SEQ ID NO: 129.

In certain embodiments, a target region is nucleotides 6949-6968 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6949-6968 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6949-6968 of SEQ ID NO: 8 is Isis No: 299040. In certain embodiments, an antisense compound targeted to nucleotides 6949-6968 of SEQ ID NO: has the sequence of SEQ ID NO: 130.

In certain embodiments, a target region is nucleotides 6930-6968 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6930-6968 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6930-6968 of SEQ ID NO: 8 is selected from Isis Nos: 299039 or 299040. In certain embodiments, an antisense compound targeted to nucleotides 6930-6968 of SEQ ID NO: has the sequence of SEQ ID NO: 129 or 130.

In certain embodiments, a target region is nucleotides 6954-6973 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6954-6973 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6954-6973 of SEQ ID NO: 8 is Isis No: 299041. In certain embodiments, an antisense compound targeted to nucleotides 6954-6973 of SEQ ID NO: has the sequence of SEQ ID NO: 131.

In certain embodiments, a target region is nucleotides 6949-6973 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6949-6973 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6949-6973 of SEQ ID NO: 8 is selected from Isis Nos: 299040 or 299041. In certain embodiments, an antisense compound targeted to nucleotides 6949-6973 of SEQ ID NO: has the sequence of SEQ ID NO: 130 or 131.

In certain embodiments, a target region is nucleotides 6930-6973 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 6930-6973 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 6930-6973 of SEQ ID NO: 8 is selected from Isis Nos: 299039, 299040 or 299041. In certain embodiments, an antisense compound targeted to nucleotides 6930-6973 of SEQ ID NO: has the sequence of SEQ ID NO: 129, 130 or 131.

In certain embodiments, a target region is nucleotides 7211-7230 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 7211-7230 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 7211-7230 of SEQ ID NO: 8 is Isis No: 299043. In certain embodiments, an antisense compound targeted to nucleotides 7211-7230 of SEQ ID NO: has the sequence of SEQ ID NO: 133.

In certain embodiments, a target region is nucleotides 7260-7279 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 7260-7279 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 7260-7279 of SEQ ID NO: 8 is Isis No: 299044. In certain embodiments, an antisense compound targeted to nucleotides 7260-7279 of SEQ ID NO: has the sequence of SEQ ID NO: 134.

In certain embodiments, a target region is nucleotides 7211-7279 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 7211-7279 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 7211-7279 of SEQ ID NO: 8 is selected from Isis Nos: 299043 or 299044. In certain embodiments, an antisense compound targeted to nucleotides 7211-7279 of SEQ ID NO: has the sequence of SEQ ID NO: 133 or 134.

In certain embodiments, a target region is nucleotides 7654-7673 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 7654-7673 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 7654-7673 of SEQ ID NO: 8 is Isis No: 298998. In certain embodiments, an antisense compound targeted to nucleotides 7654-7673 of SEQ ID NO: has the sequence of SEQ ID NO: 162.

In certain embodiments, a target region is nucleotides 8267-8286 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 8267-8286 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 8267-8286 of SEQ ID NO: 8 is Isis No: 298999. In certain embodiments, an antisense compound targeted to nucleotides 8267-8286 of SEQ ID NO: has the sequence of SEQ ID NO: 163.

In certain embodiments, a target region is nucleotides 8899-8918 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 8899-8918 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 8899-8918 of SEQ ID NO: 8 is Isis No: 299045. In certain embodiments, an antisense compound targeted to nucleotides 8899-8918 of SEQ ID NO: has the sequence of SEQ ID NO: 135.

In certain embodiments, a target region is nucleotides 8930-8948 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 8930-8948 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 8930-8948 of SEQ ID NO: 8 is Isis No: 299046. In certain embodiments, an antisense compound targeted to nucleotides 8930-8948 of SEQ ID NO: has the sequence of SEQ ID NO: 136.

In certain embodiments, a target region is nucleotides 8899-8948 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 8899-8948 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 8899-8948 of SEQ ID NO: 8 is selected from Isis Nos: 299045 or 299046. In certain embodiments, an antisense compound targeted to nucleotides 8899-8948 of SEQ ID NO: has the sequence of SEQ ID NO: 135 or 136.

In certain embodiments, a target region is nucleotides 8971-8990 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 8971-8990 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 8971-8990 of SEQ ID NO: 8 is Isis No: 299000. In certain embodiments, an antisense compound targeted to nucleotides 8971-8990 of SEQ ID NO: has the sequence of SEQ ID NO: 164.

In certain embodiments, a target region is nucleotides 8930-8990 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 8930-8990 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 8930-8990 of SEQ ID NO: 8 is selected from Isis Nos: 299046 or 299000. In certain embodiments, an antisense compound targeted to nucleotides 8930-8990 of SEQ ID NO: has the sequence of SEQ ID NO: 136 or 164.

In certain embodiments, a target region is nucleotides 8899-8990 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 8899-8990 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 8899-8990 of SEQ ID NO: 8 is selected from Isis Nos: 299045, 299046 or 299000. In certain embodiments, an antisense compound targeted to nucleotides 8899-8990 of SEQ ID NO: has the sequence of SEQ ID NO: 135, 136 or 164.

In certain embodiments, a target region is nucleotides 9169-9188 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 9169-9188 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 9169-9188 of SEQ ID NO: 8 is selected from Isis Nos: 299047. In certain embodiments, an antisense compound targeted to nucleotides 9169-9188 of SEQ ID NO: has the sequence of SEQ ID NO: 137.

In certain embodiments, a target region is nucleotides 8899-9188 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 8899-9188 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 8899-9188 of SEQ ID NO: 8 is selected from Isis Nos: 299045, 299046, 299000 or 299047. In certain embodiments, an antisense compound targeted to nucleotides 8899-9188 of SEQ ID NO: has the sequence of SEQ ID NO: 135, 136, 164 or 137.

In certain embodiments, a target region is nucleotides 9218-9237 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 9218-9237 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 9218-9237 of SEQ ID NO: 8 is Isis No: 299048. In certain embodiments, an antisense compound targeted to nucleotides 9218-9237 of SEQ ID NO: has the sequence of SEQ ID NO: 138.

In certain embodiments, a target region is nucleotides 9169-9237 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 9169-9237 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 9169-9237 of SEQ ID NO: 8 is selected from Isis Nos: 299047 or 299048. In certain embodiments, an antisense compound targeted to nucleotides 9169-9237 of SEQ ID NO: has the sequence of SEQ ID NO: 137 or 138.

In certain embodiments, a target region is nucleotides 9863-9882 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 9863-9882 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 9863-9882 of SEQ ID NO: 8 is Isis No: 299001. In certain embodiments, an antisense compound targeted to nucleotides 9863-9882 of SEQ ID NO: has the sequence of SEQ ID NO: 165.

In certain embodiments, a target region is nucleotides 10204-10233 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 10204-10233 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 10204-10233 of SEQ ID NO: 8 is Isis No: 299050. In certain embodiments, an antisense compound targeted to nucleotides 10204-10233 of SEQ ID NO: has the sequence of SEQ ID NO: 140.

In certain embodiments, a target region is nucleotides 10797-10816 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 10797-10816 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 10797-10816 of SEQ ID NO: 8 is Isis No: 299002. In certain embodiments, an antisense compound targeted to nucleotides 10797-10816 of SEQ ID NO: has the sequence of SEQ ID NO: 166.

In certain embodiments, a target region is nucleotides 10880-10899 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 10880-10899 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 10880-10899 of SEQ ID NO: 8 is Isis No: 299052. In certain embodiments, an antisense compound targeted to nucleotides 10880-10899 of SEQ ID NO: has the sequence of SEQ ID NO: 64.

In certain embodiments, a target region is nucleotides 10797-10899 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 10880-10899 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 10797-10899 of SEQ ID NO: 8 is selected from Isis Nos: 299002 or 299052. In certain embodiments, an antisense compound targeted to nucleotides 10797-10899 of SEQ ID NO: has the sequence of SEQ ID NO: 166 or 64.

In certain embodiments, a target region is nucleotides 10880-10899 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 10880-10899 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 10880-10899 of SEQ ID NO: 8 is Isis No: 299052. In certain embodiments, an antisense compound targeted to nucleotides 10880-10899 of SEQ ID NO: has the sequence of SEQ ID NO: 64.

In certain embodiments, a target region is nucleotides 11096-11115 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11096-11115 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to 11096-11115 of SEQ ID NO: 8 is Isis No: 299054. In certain embodiments, an antisense compound targeted to nucleotides 11096-11115 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 143

In certain embodiments, a target region is nucleotides 11112-11131 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11112-11131 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to 11112-11131 of SEQ ID NO: 8 is Isis No: 299055. In certain embodiments, an antisense compound targeted to nucleotides 11112-11131 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 144.

In certain embodiments, a target region is nucleotides 11096-11131 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11096-11131 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to 11096-11131 of SEQ ID NO: 8 is selected from Isis Nos: 299054 or 299055. In certain embodiments, an antisense compound targeted to nucleotides 11096-11131 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 143 or 144.

In certain embodiments, a target region is nucleotides 11118-11137 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11118-11137 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to 11118-11137 of SEQ ID NO: 8 is Isis No: 299056. In certain embodiments, an antisense compound targeted to nucleotides 11118-11137 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 145.

In certain embodiments, a target region is nucleotides 11112-11137 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11112-11137 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to 11112-11137 of SEQ ID NO: 8 is selected from Isis Nos: 299055 or 299056. In certain embodiments, an antisense compound targeted to nucleotides 11112-11137 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 144 or 145.

In certain embodiments, a target region is nucleotides 11096-11137 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11096-11137 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11096-11137 of SEQ ID NO: 8 is selected from Isis Nos: 299054, 299055, or 299056. In certain embodiments, an antisense compound targeted to nucleotides 11096-11137 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 143, 144, or 145.

In certain embodiments, a target region is nucleotides 11172-11191 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11172-11191 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11172-11191 of SEQ ID NO: 8 is Isis No: 299057. In certain embodiments, an antisense compound targeted to nucleotides 11172-11191 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 146.

In certain embodiments, a target region is nucleotides 11118-11191 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11172-11191 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11118-11191 of SEQ ID NO: 8 is selected from Isis Nos: 299056 or 299057. In certain embodiments, an antisense compound targeted to nucleotides 11118-11191 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 145 or 146.

In certain embodiments, a target region is nucleotides 11112-11191 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11112-11191 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11112-11191 of SEQ ID NO: 8 is selected from Isis Nos: 299055, 299056, or 299057. In certain embodiments, an antisense compound targeted to nucleotides 11112-11191 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 144, 145, or 146.

In certain embodiments, a target region is nucleotides 11096-11191 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 1109611191 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11096-11191 of SEQ ID NO: 8 is selected from Isis Nos: 299054, 299055, 299056, or 299057. In certain embodiments, an antisense compound targeted to nucleotides 11096-11191 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 143, 144, 145, or 146.

In certain embodiments, a target region is nucleotides 11172-11199 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11172-11199 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11172-11199 of SEQ ID NO: 8 is Isis No: 299058. In certain embodiments, an antisense compound targeted to nucleotides 11172-11199 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 147.

In certain embodiments, a target region is nucleotides 11180-11199 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11180-11199 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11180-11199 of SEQ ID NO: 8 is selected from Isis Nos: 299057 or 299058. In certain embodiments, an antisense compound targeted to nucleotides 11180-11199 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 146 or 147.

In certain embodiments, a target region is nucleotides 11118-11199 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11118-11199 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11118-11199 of SEQ ID NO: 8 is selected from Isis Nos: 299056, 299057 or 299058. In certain embodiments, an antisense compound targeted to nucleotides 11118-11199 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 145, 146 or 147.

In certain embodiments, a target region is nucleotides 11112-11199 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11112-11199 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11112-11199 of SEQ ID NO: 8 is selected from Isis Nos: 299055, 299056, 299057 or 299058. In certain embodiments, an antisense compound targeted to nucleotides 11112-11199 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 144, 145, 146 or 147.

In certain embodiments, a target region is nucleotides 11096-11199 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11096-11199 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11096-11199 of SEQ ID NO: 8 is selected from Isis Nos: 299054, 299055, 299056, 299057 or 299058. In certain embodiments, an antisense compound targeted to nucleotides 11096-11199 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 143, 144, 145, 146 or 147.

In certain embodiments, a target region is nucleotides 11244-11263 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11244-11263 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11244-11263 of SEQ ID NO: 8. is Isis No: 299059. In certain embodiments, an antisense compound targeted to nucleotides 11244-11263 of SEQ ID NO: 8. has the sequence of SEQ ID NO: 148.

In certain embodiments, a target region is nucleotides 11313-11332 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11313-11332 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11313-11332 of SEQ ID NO: 8 is Isis No: 299060. In certain embodiments, an antisense compound targeted to nucleotides 11313-11332 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 149.

In certain embodiments, a target region is nucleotides 11353-11372 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11353-11372 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11353-11372 of SEQ ID NO: 8 is Isis No: 299061. In certain embodiments, an antisense compound targeted to nucleotides 11353-11372 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 150.

In certain embodiments, a target region is nucleotides 11367-11386 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11367-11386 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11367-11386 of SEQ ID NO: 8 is Isis No: 299062. In certain embodiments, an antisense compound targeted to nucleotides 11367-11386 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 151

In certain embodiments, a target region is nucleotides 11353-11386 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11353-11386 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11353-11386 of SEQ ID NO: 8 is selected from Isis Nos: 299061 or 299062. In certain embodiments, an antisense compound targeted to nucleotides 11353-11386 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 150 or 151.

In certain embodiments, a target region is nucleotides 11466-11485 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11466-11485 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11466-11485 of SEQ ID NO: 8 is Isis No: 299063. In certain embodiments, an antisense compound targeted to nucleotides 11466-11485 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 152.

In certain embodiments, a target region is nucleotides 11367-11485 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11367-11485 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11367-11485 of SEQ ID NO: 8 is selected from Isis Nos: 299062 or 299063. In certain embodiments, an antisense compound targeted to nucleotides 11367-11485 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 151 or 152.

In certain embodiments, a target region is nucleotides 11353-11485 of SEQ ID NO: 8. In certain embodiments, an antisense compound is targeted to nucleotides 11353-11485 of SEQ ID NO: 8. In certain such embodiments, an antisense compound targeted to nucleotides 11353-11485 of SEQ ID NO: 8 is selected from Isis Nos: 299061, 299062 or 299063. In certain embodiments, an antisense compound targeted to nucleotides 11353-11485 of SEQ ID NO: 8 has the sequence of SEQ ID NO: 150, 151 or 152.

In certain embodiments, the desired effect is a reduction in mRNA target nucleic acid levels. In other embodiments, the desired effect is reduction of levels of protein encoded by the target nucleic acid or a phenotypic change associated with the target nucleic acid.

In one embodiment, a target region is a structurally defined region of the nucleic acid. For example, a target region may encompass a 3′ UTR, a 5′ UTR, an exon, an intron, a coding region, a translation initiation region, translation termination region, or other defined nucleic acid region. In other embodiments, a target region may encompass the sequence from a 5′ target site of one target segment within the target region to a 3′ target site of another target segment within the target region.

Targeting includes determination of at least one target segment to which an antisense compound hybridizes, such that a desired effect occurs. A target region may contain one or more target segments. Multiple target segments within a target region may be overlapping. Alternatively, they may be non-overlapping. In one embodiment, target segments within a target region are separated by no more than about 10 nucleotides on the target nucleic acid. In another embodiment, target segments within a target region are separated by no more than about 5 nucleotides on the target nucleic acid. In additional embodiments, target segments are contiguous.

Suitable target segments may be found within a 5′ UTR, a coding region, a 3′ UTR, an intron, or an exon. Target segments containing a start codon or a stop codon are also suitable target segments.

The determination of suitable target segments may include a comparison of the sequence of a target nucleic acid to other sequences throughout the genome. For example, the BLAST algorithm may be used to identify regions of similarity amongst different nucleic acids. This comparison can prevent the selection of antisense compound sequences that may hybridize in a non-specific manner to sequences other than a selected target nucleic acid (i.e., non-target or off-target sequences).

There may be variation in activity (e.g., as defined by percent reduction of target nucleic acid levels) of the antisense compounds within an active target region. In one embodiment, reductions in FGFR4 mRNA levels are indicative of inhibition of FGFR4 expression. Reductions in levels of an FGFR4 protein are also indicative of inhibition of target FGFR4 expression. Further, phenotypic changes are indicative of inhibition of FGFR4 expression. For example, a decrease in body fat content is indicative of inhibition of FGFR4 expression.

In certain embodiments, the compound comprises an antisense nucleic acid molecule that is specifically hybridizable with a region of a nucleic acid molecule encoding FGFR4 selected from a 5′-untranslated region (5′UTR), a start region, a coding region, a stop region, or a 3′-untranslated region (3′UTR).

In certain other embodiments, the antisense compound is targeted to nucleotides 26-45 in the (5′UTR), nucleotides 160-179, 192-227, 254-323, 354-399, 412-431, 475-502, 529-548, 597-646, 711-776, 785-804, 833-852, 964-988, 1027-1051, 1076-1140, 1181-1226, 1235-1254, 1326-1345, 1428-1471, 1555-1574, 1607-1626, 1656-1675, 1742-1760, 1772-1791, 1919-1938, 1968-1998, 2268-2287, 2313, 2332, 2394-2435, 2481-2522 in the coding region of SEQ ID NO: 5; nucleotides 2557-2584, 2629-2648, 2698-2717, 2738-2757, 2752-2771, 2851-2870 in the 3′ UTR, all of SEQ ID NO: 5; (exon2) nucleotides 115-258, (exon3) nucleotides 259-522, (exon4) nucleotides 523-603, (exon5) nucleotides 604-770, (exon6) nucleotides 771-894, (exon7) nucleotides 895-1085, (exon8) nucleotides 1086-1224, (exon9) nucleotides 1225-1418, (exon10) nucleotides 1419-1564, (exon11) nucleotides 1565-1696, (exon12) nucleotides 1687-1797, (exon13) nucleotides 1798-1988, (exon14) nucleotides 1989-2111, (exon15) nucleotides 2112-2182, (exon16) nucleotides 2183-2320, (exon17) nucleotides 2321-2426, (exon18) nucleotides 2427-3026, and nucleotides 26-45, 160-179, 192-211, 160-211, 208-227, 160-227, 192-227, 254-273, 278-297, 289-308, 289-323, 278-308, 304-323, 278-323, 289-373, 278-373, 354-373, 380-399, 412-431, 475-494, 412-494, 483-502, 475-502, 529-548, 597-616, 602-621, 597-621, 627-646, 711-730, 727-746, 739-758, 757-776, 711-746, 711-758, 711-776, 727-746, 727-758, 739-758, 727-776, 739-776, 757-776, 785-804, 833-852, 785-852, 833-983, 964-983, 785-983, 833-988, 785-988, 969-988, 964-988, 1027-1046, 1032-1051, 1027-1051, 1076-1096, 1090-1109, 1095-1114, 1076-1109, 1076-1114, 1090-1114, 1121-1040, 1181-1200, 1121-1200, 1121-1226, 1181-1226, 1235-1345, 1428-1447, 1447-1466, 1428-1466, 1452-1471, 1428-1471, 1555-1574, 1607-1626, 1656-1675, 155-1626, 1607-1675, 1555-1675, 1326-1675, 1741-1760, 1772-1791, 1919-1938, 1968-1987, 1979-1998, 1968-1998, 2268-2287, 2313-2332, 2394-2413, 2481-2500, 2497-2516, 2503-2522, 2557-2576, 2565-2584, 2629-2648, 2738-2757, 2752-2771, 2497-2584, 2738-2870, 2497-2870, or 2313-2413 of SEQ ID NO: 5.

In certain other embodiments, the antisense compound is targeted to nucleotides 26-45 in the (5′UTR), nucleotides 3118-3120 of the start codon, nucleotides 11192-111642 of the 3′ UTR, (exon1) nucleotides 379-548, (exon1a) nucleotides 538-592, (exon2) nucleotides 3065-3208, (exon3) nucleotides 3905-4168, (exon4) nucleotides 4260-4340, (exon4a) nucleotides 4260-4611, (exon5) nucleotides 4453-4619, (exon6) nucleotides 5200-5323, (exon7) nucleotides 5836-6026, (exon8) nucleotides 6161-6299, (exon9) nucleotides 6653-6846, (exon10a) nucleotides 6847-7066, (exon10) nucleotides 6291-7066, (exon11) nucleotides 7169-7290, (exon12) nucleotides 8845-8955, (exon13) nucleotides 9048-9238, (exon14) nucleotides 9572-9694, (exon15) nucleotides 9802-9872, (exon16) nucleotides 10119-10256, (exon17) nucleotides 10807-10912, (exon18) nucleotides 11042-11641, (intron1) nucleotides 549-3064, (intron1a) nucleotides 593-3064, (intron2) nucleotides 3209-3904, (intron3) nucleotides 4169-4259, (intron4) nucleotides 4941-4452, (intron5) nucleotides 4620-5199, (intron6) nucleotides 5324-5835, (intron1) nucleotides 6027-6160, (intron8) nucleotides 6300-6652, (intron9) nucleotides 6847-6920, (intron10) nucleotides 7067-7168, (intron11) nucleotides 7291-8844, (intron12) nucleotides 8956-9047, (intron13) nucleotides 9239-9571, (intron14) nucleotides 9695-9801, (intron15) nucleotides 9873-10118, (intron16) nucleotides 10257-10806, and (intron17) nucleotides 10913-11041, nucleotides 432-442, 460-479, 538-602, 1913-1932, 3110-3129, 3142-3161, 3158-3177, 3199-3218, 3924-3943, 3935-3954, 3950-3969, 3924-3954, 3935-3969, 3924-3969, 4000-4019, 4026-4045, 4058-4077, 4121-4140, 4129-4148, 4121-4148, 4058-4148, 4174-4193, 4250-4269, 4266-4285, 4174-4285, 4058-4285, 4451-4470, 4476-4495, 4560-4579, 4576-4595, 4588-4607, 4560-4595, 4576-4607, 4560-4607, 5214-5233, 5262-5281, 5214-5281, 5905-5924, 5910-5929, 5905-5929, 5968-5987, 5910-5987, 5905-5987, 5973-5992, 5968-5992, 5910-5992, 6165-6184, 6170-6189, 6165-6189, 6196-6215, 6170-6215, 6256-6275, 6663-6682, 6754-6773, 6868-6887, 6930-6949, 6949-6968, 6930-6968, 6954-6973, 6949-6973, 6930-6973, 7211-7230, 7260-7279, 7211-7279, 7654-7673, 8267-8286, 8899-8918, 8930-8948, 8899-8948, 8971-8990, 8930-8990, 8899-8990, 9169-9188, 8899-9188, 9218-9237, 9169-9237, 9863-9882, 10204-10233, 10797-10816, 10880-10899, 10797-10899, 10880-10899, 11096-11115, 11112-11131, 11096-11131, 11118-11137, 11112-11137, 11096-11137, 11172-11191, 11118-11191, 11112-11191, 11096-11191, 11172-11199, 11180-11199, 11118-11199, 11112-11199, 11096-11199, 11244-11265, 11313-11332, 11353-11372, 11369-11386, 11466-11485, 11367-11485, or 11353-11485 of SEQ ID NO: 8.

Hybridization

For example, hybridization may occur between an antisense compound disclosed herein and a FGFR4 nucleic acid. The most common mechanism of hybridization involves hydrogen bonding (e.g., Watson-Crick, Hoogsteen or reversed Hoogsteen hydrogen bonding) between complementary nucleobases of the nucleic acid molecules.

Hybridization can occur under varying conditions. Stringent conditions are sequence-dependent and are determined by the nature and composition of the nucleic acid molecules to be hybridized.

Methods of determining whether a sequence is specifically hybridizable to a target nucleic acid are well known in the art. In one embodiment, the antisense compounds provided herein are specifically hybridizable with an FGFR4 nucleic acid.

Complementarity

An antisense compound and a target nucleic acid are complementary to each other when a sufficient number of nucleobases of the antisense compound can hydrogen bond with the corresponding nucleobases of the target nucleic acid, such that a desired effect will occur (e.g., antisense inhibition of a target nucleic acid, such as an FGFR4 nucleic acid).

Non-complementary nucleobases between an antisense compound and an FGFR4 nucleic acid may be tolerated provided that the antisense compound remains able to specifically hybridize to a target nucleic acid. Moreover, an antisense compound may hybridize over one or more segments of an FGFR4 nucleic acid such that intervening or adjacent segments are not involved in the hybridization event (e.g., a loop structure, mismatch or hairpin structure).

In some embodiments, the antisense compounds provided herein are at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% complementary to an FGFR4 nucleic acid. Percent complementarity of an antisense compound with a target nucleic acid can be determined using routine methods.

In other embodiments, the antisense compounds provided herein are fully complementary (i.e., 100% complementary) to a target nucleic acid. For example, antisense compound may be fully complementary to an FGFR4 nucleic acid. As used herein, “fully complementary” means each nucleobase of an antisense compound is capable of precise base pairing with the corresponding nucleobases of a target nucleic acid.

The location of a non-complementary nucleobase may be at the 5′ end or 3′ end of the antisense compound. Alternatively, the non-complementary nucleobase or nucleobases may be at an internal position of the antisense compound. When two or more non-complementary nucleobases are present, they may be contiguous (i.e. linked) or non-contiguous. In one embodiment, a non-complementary nucleobase is located in the wing segment of a gapmer antisense oligonucleotide.

In one embodiment, antisense compounds up to 20 nucleobases in length comprise no more than 4, no more than 3, no more than 2 or no more than 1 non-complementary nucleobase(s) relative to a target nucleic acid, such as an FGFR4 nucleic acid.

In another embodiment, antisense compounds up to 30 nucleobases in length comprise no more than 6, no more than 5, no more than 4, no more than 3, no more than 2 or no more than 1 non-complementary nucleobase(s) relative to a target nucleic acid, such as an FGFR4 nucleic acid.

The antisense compounds provided herein also include those which are complementary to a portion of a target nucleic acid. As used herein, “portion” refers to a defined number of contiguous (i.e. linked) nucleobases within a region or segment of a target nucleic acid. A “portion” can also refer to a defined number of contiguous nucleobases of an antisense compound. In one embodiment, the antisense compounds are complementary to at least an 8 nucleobase portion of a target segment. In another embodiment, the antisense compounds are complementary to at least a 12 nucleobase portion of a target segment. In yet another embodiment, the antisense compounds are complementary to at least a 15 nucleobase portion of a target segment.

Identity

The antisense compounds provided herein may also have a defined percent identity to a particular nucleotide sequence, SEQ ID NO, or compound represented by a specific Isis number. As used herein, an antisense compound is identical to the sequence disclosed herein if it has the same nucleobase pairing ability. For example, an RNA which contains uracil in place of thymidine in a disclosed DNA sequence would be considered identical to the DNA sequence since both uracil and thymidine pair with adenine. Shortened and lengthened versions of the antisense compounds described herein as well as compounds having non-identical bases relative to the antisense compounds provided herein also are contemplated. The non-identical bases may be adjacent to each other or dispersed throughout the antisense compound. Percent identity of an antisense compound is calculated according to the number of bases that have identical base pairing relative to the sequence to which it is being compared.

In one embodiment, the antisense compounds are at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95% or 100% identical to one or more of the antisense compounds disclosed herein.

Modifications

A nucleoside is a base-sugar combination. The nucleobase (also known as base) portion of the nucleoside is normally a heterocyclic base moiety. Nucleotides are nucleosides that further include a phosphate group covalently linked to the sugar portion of the nucleoside. For those nucleosides that include a pentofuranosyl sugar, the phosphate group can be linked to the 2′, 3′ or 5′ hydroxyl moiety of the sugar. Oligonucleotides are formed through the covalent linkage of adjacent nucleosides to one another, to form a linear polymeric oligonucleotide. Within the oligonucleotide structure, the phosphate groups are commonly referred to as forming the internucleoside linkages of the oligonucleotide.

Modifications to antisense compounds encompass substitutions or changes to internucleoside linkages, sugar moieties, or nucleobases. Modified antisense compounds are often preferred over native forms because of desirable properties such as, for example, enhanced cellular uptake, enhanced affinity for nucleic acid target, increased stability in the presence of nucleases, or increased inhibitory activity.

Chemically modified nucleosides may also be employed to increase the binding affinity of a shortened or truncated antisense oligonucleotide for its target nucleic acid. Consequently, comparable results can often be obtained with shorter antisense compounds that have such chemically modified nucleosides.

Modified Internucleoside Linkages

The naturally occurring internucleoside linkage of RNA and DNA is a 3′ to 5′ phosphodiester linkage. Antisense compounds having one or more modified, i.e. non-naturally occurring, internucleoside linkages are often selected over antisense compounds having naturally occurring internucleoside linkages because of desirable properties such as, for example, enhanced cellular uptake, enhanced affinity for target nucleic acids, and increased stability in the presence of nucleases.

Oligonucleotides having modified internucleoside linkages include internucleoside linkages that retain a phosphorus atom as well as internucleoside linkages that do not have a phosphorus atom. Representative phosphorus containing internucleoside linkages include, but are not limited to, phosphodiesters, phosphotriesters, methylphosphonates, phosphoramidate, and phosphorothioates. Methods of preparation of phosphorous-containing and non-phosphorous-containing linkages are well known.

In one embodiment, antisense compounds targeted to an FGFR4 nucleic acid comprise one or more modified internucleoside linkages. In some embodiments, the modified internucleoside linkages are phosphorothioate linkages. In other embodiments, each internucleoside linkage of an antisense compound is a phosphorothioate internucleoside linkage.

Modified Sugar Moieties

Antisense compounds targeted to an FGFR4 nucleic acid may contain one or more nucleotides having modified sugar moieties. Sugar modifications may impart nuclease stability, binding affinity or some other beneficial biological property to the antisense compounds. The furanosyl sugar ring of a nucleoside can be modified in a number of ways including, but not limited to: addition of a substituent group, particularly at the 2′ position; bridging of two non-geminal ring atoms to form a bicyclic nucleic acid (BNA); and substitution of an atom or group such as —S—, —N(R)— or —C(R₁)(R₂) for the ring oxygen at the 4′-position. Modified sugars include, but are not limited to: substituted sugars, especially 2′-substituted sugars having a 2′-F, 2′-OCH₂ (2′-OMe) or a 2′-O(CH₂)₂—OCH₃ (2′-O-methoxyethyl or 2′-MOE) substituent group; and bicyclic modified sugars (BNAs), having a 4′-(CH₂)_(n)—O-2′ bridge, where n=1 or n=2. Methods for the preparations of modified sugars are well known to those skilled in the art.

In nucleotides having modified sugar moieties, the nucleobase moieties (natural, modified or a combination thereof) are maintained for hybridization with an appropriate nucleic acid target.

In one embodiment, antisense compounds targeted to an FGFR4 nucleic acid comprise one or more nucleotides having modified sugar moieties. In a suitable embodiment, the modified sugar moiety is 2′-MOE. In other embodiments, the 2′-MOE modified nucleotides are arranged in a gapmer motif

Modified Nucleobases

Nucleobase (or base) modifications or substitutions are structurally distinguishable from, yet functionally interchangeable with, naturally occurring or synthetic unmodified nucleobases. Both natural and modified nucleobases are capable of participating in hydrogen bonding. Such nucleobase modifications may impart nuclease stability, binding affinity or some other beneficial biological property to antisense compounds. Modified nucleobases include synthetic and natural nucleobases such as, for example, 5-methylcytosine (5-me-C). Certain nucleobase substitutions, including 5-methylcytosine substitutions, are particularly useful for increasing the binding affinity of an antisense compound for a target nucleic acid. For example, 5-methylcytosine substitutions have been shown to increase nucleic acid duplex stability by 0.6-1.2° C. (Sanghvi, Y. S., Crooke, S. T. and Lebleu, B., eds., Antisense Research and Applications, CRC Press, Boca Raton, 1993, pp. 276-278).

Additional unmodified nucleobases include 5-hydroxymethyl cytosine, xanthine, hypoxanthine, 2-aminoadenine, 6-methyl and other alkyl derivatives of adenine and guanine, 2-propyl and other alkyl derivatives of adenine and guanine, 2-thiouracil, 2-thiothymine and 2-thiocytosine, 5-halouracil and cytosine, 5-propynyl (—C≡C—CH₃) uracil and cytosine and other alkynyl derivatives of pyrimidine bases, 6-azo uracil, cytosine and thymine, 5-uracil (pseudouracil), 4-thiouracil, 8-halo, 8-amino, 8-thiol, 8-thioalkyl, 8-hydroxyl and other 8-substituted adenines and guanines, 5-halo particularly 5-bromo, 5-trifluoromethyl and other 5-substituted uracils and cytosines, 7-methylguanine and 7-methyladenine, 2-F-adenine, 2-amino-adenine, 8-azaguanine and 8-azaadenine, 7-deazaguanine and 7-deazaadenine and 3-deazaguanine and 3-deazaadenine.

Heterocyclic base moieties may also include those in which the purine or pyrimidine base is replaced with other heterocycles, for example 7-deaza-adenine, 7-deazaguanosine, 2-aminopyridine and 2-pyridone. Nucleobases that are particularly useful for increasing the binding affinity of antisense compounds include 5-substituted pyrimidines, 6-azapyrimidines and N-2, N-6 and O-6 substituted purines, including 2 aminopropyladenine, 5-propynyluracil and 5-propynylcytosine.

In one embodiment, antisense compounds targeted to an FGFR4 nucleic acid comprise one or more modified nucleobases. In an additional embodiment, gapmer antisense oligonucleotides targeted to an FGFR4 nucleic acid comprise one or more modified nucleobases. In some embodiments, the modified nucleobase is 5-methylcytosine. In further embodiments, each cytosine is a 5-methylcytosine.

Compositions and Methods for Formulating Pharmaceutical Compositions

Antisense oligonucleotides may be admixed with pharmaceutically acceptable active and/or inert substances for the preparation of pharmaceutical compositions or formulations. Compositions and methods for the formulation of pharmaceutical compositions are dependent upon a number of criteria, including, but not limited to, route of administration, extent of disease, or dose to be administered.

An antisense compound targeted to an FGFR4 nucleic acid can be utilized in pharmaceutical compositions by combining the antisense compound with a suitable pharmaceutically acceptable diluent or carrier. A pharmaceutically acceptable diluent includes phosphate-buffered saline (PBS). PBS is a diluent suitable for use in compositions to be delivered parenterally. Accordingly, in one embodiment, employed in the methods described herein is a pharmaceutical composition comprising an antisense compound targeted to an FGFR4 nucleic acid and a pharmaceutically acceptable diluent. In one embodiment, the pharmaceutically acceptable diluent is PBS. In other embodiments, the antisense compound is an antisense oligonucleotide.

Pharmaceutical compositions comprising antisense compounds encompass any pharmaceutically acceptable salts, esters, or salts of such esters, or any other oligonucleotide which, upon administration to an animal, including a human, is capable of providing (directly or indirectly) the biologically active metabolite or residue thereof. Accordingly, for example, the disclosure is also drawn to pharmaceutically acceptable salts of antisense compounds, prodrugs, pharmaceutically acceptable salts of such prodrugs, and other bioequivalents. Suitable pharmaceutically acceptable salts include, but are not limited to, sodium and potassium salts.

A prodrug can include the incorporation of additional nucleosides at one or both ends of an antisense compound which are cleaved by endogenous nucleases within the body, to form the active antisense compound.

In certain embodiments, pharmaceutical compositions of the present invention comprise one or more oligonucleotides and one or more excipients. In certain such embodiments, excipients are selected from water, salt solutions, alcohol, polyethylene glycols, gelatin, lactose, amylase, magnesium stearate, talc, silicic acid, viscous paraffin, hydroxymethylcellulosem and polyvinylpyrrolidone.

In certain embodiments, a pharmaceutical composition of the present invention is prepared using known techniques, including, but not limited to mixing, dissolving, granulating, dragee-making, levigating, emulsifying, encapsulating, entrapping or tabletting processes.

In certain embodiments, a pharmaceutical composition of the present invention is a liquid (e.g., a suspension, elixir and/or solution). In certain of such embodiments, a liquid pharmaceutical composition is prepared using ingredients known in the art, including, but not limited to, water, glycols, oils, alcohols, flavoring agents, preservatives, and coloring agents.

In certain embodiments, a pharmaceutical composition of the present invention is a solid (e.g., a powder, tablet, and/or capsule). In certain of such embodiments, a solid pharmaceutical composition comprising one or more oligonucleotides is prepared using ingredients known in the art, including, but not limited to, starches, sugars, diluents, granulating agents, lubricants, binders, and disintegrating agents.

In certain embodiments, a pharmaceutical composition of the present invention is formulated as a depot preparation. Certain such depot preparations are typically longer acting than non-depot preparations. In certain embodiments, such preparations are administered by implantation (for example subcutaneously or intramuscularly) or by intramuscular injection. In certain embodiments, depot preparations are prepared using suitable polymeric or hydrophobic materials (for example an emulsion in an acceptable oil) or ion exchange resins, or as sparingly soluble derivatives, for example, as a sparingly soluble salt.

In certain embodiments, a pharmaceutical composition of the present invention comprises a delivery system. Examples of delivery systems include, but are not limited to, liposomes and emulsions. Certain delivery systems are useful for preparing certain pharmaceutical compositions including those comprising hydrophobic compounds. In certain embodiments, certain organic solvents such as dimethylsulfoxide are used.

In certain embodiments, a pharmaceutical composition of the present invention comprises one or more tissue-specific delivery molecules designed to deliver the one or more pharmaceutical agents of the present invention to specific tissues or cell types. For example, in certain embodiments, pharmaceutical compositions include liposomes coated with a tissue-specific antibody.

In certain embodiments, a pharmaceutical composition of the present invention comprises a co-solvent system. Certain of such co-solvent systems comprise, for example, benzyl alcohol, a nonpolar surfactant, a water-miscible organic polymer, and an aqueous phase. In certain embodiments, such co-solvent systems are used for hydrophobic compounds. A non-limiting example of such a co-solvent system is the VPD co-solvent system, which is a solution of absolute ethanol comprising 3% w/v benzyl alcohol, 8% w/v of the nonpolar surfactant Polysorbate 80™, and 65% w/v polyethylene glycol 300. The proportions of such co-solvent systems may be varied considerably without significantly altering their solubility and toxicity characteristics. Furthermore, the identity of co-solvent components may be varied: for example, other surfactants may be used instead of Polysorbate 80™; the fraction size of polyethylene glycol may be varied; other biocompatible polymers may replace polyethylene glycol, e.g., polyvinyl pyrrolidone; and other sugars or polysaccharides may substitute for dextrose.

In certain embodiments, a pharmaceutical composition of the present invention comprises a sustained-release system. A non-limiting example of such a sustained-release system is a semi-permeable matrix of solid hydrophobic polymers. In certain embodiments, sustained-release systems may, depending on their chemical nature, release pharmaceutical agents over a period of hours, days, weeks or months.

In certain embodiments, a pharmaceutical composition of the present invention is prepared for oral administration. In certain of such embodiments, a pharmaceutical composition is formulated by combining one or more oligonucleotides with one or more pharmaceutically acceptable carriers. Certain of such carriers enable pharmaceutical compositions to be formulated as tablets, pills, dragees, capsules, liquids, gels, syrups, slurries, suspensions and the like, for oral ingestion by a subject. In certain embodiments, pharmaceutical compositions for oral use are obtained by mixing oligonucleotide and one or more solid excipient. Suitable excipients include, but are not limited to, fillers, such as sugars, including lactose, sucrose, mannitol, or sorbitol; cellulose preparations such as, for example, maize starch, wheat starch, rice starch, potato starch, gelatin, gum tragacanth, methyl cellulose, hydroxypropylmethyl-cellulose, sodium carboxymethylcellulose, and/or polyvinylpyrrolidone (PVP). In certain embodiments, such a mixture is optionally ground and auxiliaries are optionally added. In certain embodiments, pharmaceutical compositions are formed to obtain tablets or dragee cores. In certain embodiments, disintegrating agents (e.g., cross-linked polyvinyl pyrrolidone, agar, or alginic acid or a salt thereof, such as sodium alginate) are added.

In certain embodiments, dragee cores are provided with coatings. In certain such embodiments, concentrated sugar solutions may be used, which may optionally contain gum arabic, talc, polyvinyl pyrrolidone, carbopol gel, polyethylene glycol, and/or titanium dioxide, lacquer solutions, and suitable organic solvents or solvent mixtures. Dyestuffs or pigments may be added to tablets or dragee coatings.

In certain embodiments, pharmaceutical compositions for oral administration are push-fit capsules made of gelatin. Certain of such push-fit capsules comprise one or more pharmaceutical agents of the present invention in admixture with one or more filler such as lactose, binders such as starches, and/or lubricants such as talc or magnesium stearate and, optionally, stabilizers. In certain embodiments, pharmaceutical compositions for oral administration are soft, sealed capsules made of gelatin and a plasticizer, such as glycerol or sorbitol. In certain soft capsules, one or more pharmaceutical agents of the present invention are be dissolved or suspended in suitable liquids, such as fatty oils, liquid paraffin, or liquid polyethylene glycols. In addition, stabilizers may be added.

In certain embodiments, pharmaceutical compositions are prepared for buccal administration. Certain of such pharmaceutical compositions are tablets or lozenges formulated in conventional manner.

In certain embodiments, a pharmaceutical composition is prepared for administration by injection (e.g., intravenous, subcutaneous, intramuscular, etc.). In certain of such embodiments, a pharmaceutical composition comprises a carrier and is formulated in aqueous solution, such as water or physiologically compatible buffers such as Hanks's solution, Ringer's solution, or physiological saline buffer. In certain embodiments, other ingredients are included (e.g., ingredients that aid in solubility or serve as preservatives). In certain embodiments, injectable suspensions are prepared using appropriate liquid carriers, suspending agents and the like. Certain pharmaceutical compositions for injection are presented in unit dosage form, e.g., in ampoules or in multi-dose containers. Certain pharmaceutical compositions for injection are suspensions, solutions or emulsions in oily or aqueous vehicles, and may contain formulatory agents such as suspending, stabilizing and/or dispersing agents. Certain solvents suitable for use in pharmaceutical compositions for injection include, but are not limited to, lipophilic solvents and fatty oils, such as sesame oil, synthetic fatty acid esters, such as ethyl oleate or triglycerides, and liposomes. Aqueous injection suspensions may contain substances that increase the viscosity of the suspension, such as sodium carboxymethyl cellulose, sorbitol, or dextran. Optionally, such suspensions may also contain suitable stabilizers or agents that increase the solubility of the phaiinaceutical agents to allow for the preparation of highly concentrated solutions.

In certain embodiments, a pharmaceutical composition is prepared for transmucosal administration. In certain of such embodiments penetrants appropriate to the barrier to be permeated are used in the formulation. Such penetrants are generally known in the art.

In certain embodiments, a pharmaceutical composition is prepared for administration by inhalation. Certain of such pharmaceutical compositions for inhalation are prepared in the form of an aerosol spray in a pressurized pack or a nebulizer. Certain of such pharmaceutical compositions comprise a propellant, e.g., dichlorodifluoromethane, trichlorofluoromethane, dichlorotetrafluoroethane, carbon dioxide or other suitable gas. In certain embodiments using a pressurized aerosol, the dosage unit may be determined with a valve that delivers a metered amount. In certain embodiments, capsules and cartridges for use in an inhaler or insufflator may be formulated. Certain of such formulations comprise a powder mixture of a pharmaceutical agent of the invention and a suitable powder base such as lactose or starch.

In certain embodiments, a pharmaceutical composition is prepared for rectal administration, such as a suppositories or retention enema. Certain of such pharmaceutical compositions comprise known ingredients, such as cocoa butter and/or other glycerides.

In certain embodiments, a pharmaceutical composition is prepared for topical administration. Certain of such pharmaceutical compositions comprise bland moisturizing bases, such as ointments or creams. Exemplary suitable ointment bases include, but are not limited to, petrolatum, petrolatum plus volatile silicones, lanolin and water in oil emulsions such as Eucerin™, available from Beiersdorf (Cincinnati, Ohio). Exemplary suitable cream bases include, but are not limited to, Nivea™. Cream, available from Beiersdorf (Cincinnati, Ohio), cold cream (USP), Purpose Cream™, available from Johnson & Johnson (New Brunswick, N.J.), hydrophilic ointment (USP) and Lubriderm™, available from Pfizer (Morris Plains, N.J.).

In certain embodiments, a pharmaceutical composition of the present invention comprises an oligonucleotide in a therapeutically effective amount. In certain embodiments, the therapeutically effective amount is sufficient to prevent, alleviate or ameliorate symptoms of a disease or to prolong the survival of the subject being treated. Determination of a therapeutically effective amount is well within the capability of those skilled in the art.

In certain embodiments, one or more oligonucleotides of the present invention is formulated as a prodrug. In certain embodiments, upon in vivo administration, a prodrug is chemically converted to the biologically, pharmaceutically or therapeutically more active form of the oligonucleotide. In certain embodiments, prodrugs are useful because they are easier to administer than the corresponding active form. For example, in certain instances, a prodrug may be more bioavailable (e.g., through oral administration) than is the corresponding active form. In certain instances, a prodrug may have improved solubility compared to the corresponding active form. In certain embodiments, prodrugs are less water soluble than the corresponding active form. In certain instances, such prodrugs possess superior transmittal across cell membranes, where water solubility is detrimental to mobility. In certain embodiments, a prodrug is an ester. In certain such embodiments, the ester is metabolically hydrolyzed to carboxylic acid upon administration. In certain instances the carboxylic acid containing compound is the corresponding active form. In certain embodiments, a prodrug comprises a short peptide (polyaminoacid) bound to an acid group. In certain of such embodiments, the peptide is cleaved upon administration to form the corresponding active form.

In certain embodiments, a prodrug is produced by modifying a pharmaceutically active compound such that the active compound will be regenerated upon in vivo administration. The prodrug can be designed to alter the metabolic stability or the transport characteristics of a drug, to mask side effects or toxicity, to improve the flavor of a drug or to alter other characteristics or properties of a drug. By virtue of knowledge of pharmacodynamic processes and drug metabolism in vivo, those of skill in this art, once a pharmaceutically active compound is known, can design prodrugs of the compound (see, e.g., Nogrady (1985) Medicinal Chemistry A Biochemical Approach, Oxford University Press, New York, pages 388-392).

In certain embodiments, a pharmaceutical composition comprising one or more pharmaceutical agents of the present invention is useful for treating a conditions or disorders in a mammalian, and particularly in a human, subject. Suitable administration routes include, but are not limited to, oral, rectal, transmucosal, intestinal, enteral, topical, suppository, through inhalation, intrathecal, intraventricular, intraperitoneal, intranasal, intraocular and parenteral (e.g., intravenous, intramuscular, intramedullary, and subcutaneous). In certain embodiments, pharmaceutical intrathecals are administered to achieve local rather than systemic exposures. For example, pharmaceutical compositions may be injected directly in the area of desired effect (e.g., in the renal or cardiac area).

In certain embodiments, a pharmaceutical composition of the present invention is administered in the form of a dosage unit (e.g., tablet, capsule, bolus, etc.). In certain embodiments, such pharmaceutical compositions comprise an oligonucleotide in a dose selected from 25 mg, 30 mg, 35 mg, 40 mg, 45 mg, 50 mg, 55 mg, 60 mg, 65 mg, 70 mg, 75 mg, 80 mg, 85 mg, 90 mg, 95 mg, 100 mg, 105 mg, 110 mg, 115 mg, 120 mg, 125 mg, 130 mg, 135 mg, 140 mg, 145 mg, 150 mg, 155 mg, 160 mg, 165 mg, 170 mg, 175 mg, 180 mg, 185 mg, 190 mg, 195 mg, 200 mg, 205 mg, 210 mg, 215 mg, 220 mg, 225 mg, 230 mg, 235 mg, 240 mg, 245 mg, 250 mg, 255 mg, 260 mg, 265 mg, 270 mg, 270 mg, 280 mg, 285 mg, 290 mg, 295 mg, 300 mg, 305 mg, 310 mg, 315 mg, 320 mg, 325 mg, 330 mg, 335 mg, 340 mg, 345 mg, 350 mg, 355 mg, 360 mg, 365 mg, 370 mg, 375 mg, 380 mg, 385 mg, 390 mg, 395 mg, 400 mg, 405 mg, 410 mg, 415 mg, 420 mg, 425 mg, 430 mg, 435 mg, 440 mg, 445 mg, 450 mg, 455 mg, 460 mg, 465 mg, 470 mg, 475 mg, 480 mg, 485 mg, 490 mg, 495 mg, 500 mg, 505 mg, 510 mg, 515 mg, 520 mg, 525 mg, 530 mg, 535 mg, 540 mg, 545 mg, 550 mg, 555 mg, 560 mg, 565 mg, 570 mg, 575 mg, 580 mg, 585 mg, 590 mg, 595 mg, 600 mg, 605 mg, 610 mg, 615 mg, 620 mg, 625 mg, 630 mg, 635 mg, 640 mg, 645 mg, 650 mg, 655 mg, 660 mg, 665 mg, 670 mg, 675 mg, 680 mg, 685 mg, 690 mg, 695 mg, 700 mg, 705 mg, 710 mg, 715 mg, 720 mg, 725 mg, 730 mg, 735 mg, 740 mg, 745 mg, 750 mg, 755 mg, 760 mg, 765 mg, 770 mg, 775 mg, 780 mg, 785 mg, 790 mg, 795 mg, and 800 mg. In certain such embodiments, a pharmaceutical composition of the present invention comprises a dose of oligonucleotide selected from 25 mg, 50 mg, 75 mg, 100 mg, 150 mg, 200 mg, 250 mg, 300 mg, 350 mg, 400 mg, 500 mg, 600 mg, 700 mg, and 800 mg. In certain embodiments, a pharmaceutical composition is comprises a dose of oligonucleotide selected from 50 mg, 100 mg, 150 mg, 200 mg, 250 mg, 300 mg, and 400 mg. In certain embodiments the dose is administered at intervals ranging from more than once per day, once per day, once per week, twice per week, three times per week, four times per week, five times per week, 6 times per week, once per month to once per three months, for as long as needed to sustain the desired effect.

In a further aspect, a pharmaceutical agent is sterile lyophilized oligonucleotide that is reconstituted with a suitable diluent, e.g., sterile water for injection. The reconstituted product is administered as a subcutaneous injection or as an intravenous infusion after dilution into saline. The lyophilized drug product consists of the oligonucleotide which has been prepared in water for injection, adjusted to pH 7.0-9.0 with acid or base during preparation, and then lyophilized. The lyophilized oligonucleotide may be 25-800 mg of the oligonucleotide. It is understood that this encompasses 25, 50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775, and 800 mg of lyophilized oligonucleotide. The lyophilized drug product may be packaged in a 2 mL Type I, clear glass vial (ammonium sulfate-treated), stoppered with a bromobutyl rubber closure and sealed with an aluminum FLIP-OFF® overseal. In one embodiment, the lyophilized pharmaceutical agent comprises ISIS 301012.

The compositions of the present invention may additionally contain other adjunct components conventionally found in pharmaceutical compositions, at their art-established usage levels. Thus, for example, the compositions may contain additional, compatible, pharmaceutically-active materials such as, for example, antipruritics, astringents, local anesthetics or anti-inflammatory agents, or may contain additional materials useful in physically formulating various dosage forms of the compositions of the present invention, such as dyes, flavoring agents, preservatives, antioxidants, opacifiers, thickening agents and stabilizers. However, such materials, when added, should not unduly interfere with the biological activities of the components of the compositions of the present invention. The formulations can be sterilized and, if desired, mixed with auxiliary agents, e.g., lubricants, preservatives, stabilizers, wetting agents, emulsifiers, salts for influencing osmotic pressure, buffers, colorings, flavorings and/or aromatic substances and the like which do not deleteriously interact with the oligonucleotide(s) of the formulation.

Conjugated Antisense Compounds

Antisense compounds may be covalently linked to one or more moieties or conjugates which enhance the activity, cellular distribution or cellular uptake of the resulting antisense oligonucleotides. Typical conjugate groups include cholesterol moieties and lipid moieties. Additional conjugate groups include carbohydrates, phospholipids, biotin, phenazine, folate, phenanthridine, anthraquinone, acridine, fluoresceins, rhodamines, coumarins, and dyes.

Antisense compounds can also be modified to have one or more stabilizing groups that are generally attached to one or both termini of antisense compounds to enhance properties such as, for example, nuclease stability. Included in stabilizing groups are cap structures. These terminal modifications protect the antisense compound having terminal nucleic acid from exonuclease degradation, and can help in delivery and/or localization within a cell. The cap can be present at the 5′-terminus (5′-cap), or at the 3′-terminus (3′-cap), or can be present on both termini. Cap structures are well known in the art and include, for example, inverted deoxy abasic caps. Further 3′ and 5′-stabilizing groups that can be used to cap one or both ends of an antisense compound to impart nuclease stability include those disclosed in WO 03/004602 published on Jan. 16, 2003.

Cell Culture and Antisense Compounds Treatment

The effects of antisense compounds on the level, activity or expression of mDICT nucleic acids can be tested in vitro in a variety of cell types. Cell types used for such analyses are available from commerical vendors (e.g. American Type Culture Collection, Manassus, Va.; Zen-Bio, Inc., Research Triangle Park, N.C.; Clonetics Corporation, Walkersville, Md.) and cells are cultured according to the vendor's instructions using commercially available reagents (e.g. Invitrogen Life Technologies, Carlsbad, Calif.). Illustrative cell types include, but are not limited to, HepG2 cells, Hep3B cells, and primary hepatocytes.

In Vitro Testing of Antisense Oligonucleotides

Described herein are methods for treatment of cells with antisense oligonucleotides, which can be modified appropriately for treatment with other antisense compounds.

In general, cells are treated with antisense oligonucleotides when they cells reach approximately 60-80% confluency in culture.

One reagent commonly used to introduce antisense oligonucleotides into cultured cells includes the cationic lipid transfection reagent LIPOFECTIN® (Invitrogen, Carlsbad, Calif.). Antisense oligonucleotides are mixed with LIPOFECTIN® in OPTI-MEM® 1 (Invitrogen, Carlsbad, Calif.) to achieve the desired final concentration of antisense oligonucleotide and a LIPOFECTIN® concentration that typically ranges 2 to 12 ug/mL per 100 nM antisense oligonucleotide.

Another reagent used to introduce antisense oligonucleotides into cultured cells includes LIPOFECTAMINE® (Invitrogen, Carlsbad, Calif.). Antisense oligonucleotide is mixed with LIPOFECTAMINE® in OPTI-MEM® 1 reduced serum medium (Invitrogen, Carlsbad, Calif.) to achieve the desired concentration of antisense oligonucleotide and a LIPOFECTAMINE® concentration that typically ranges 2 to 12 ug/mL per 100 nM antisense oligonucleotide.

Cells are treated with antisense oligonucleotides by routine methods. Cells are typically harvested 16-24 hours after antisense oligonucleotide treatment, at which time RNA or protein levels of target nucleic acids are measured by methods known in the art and described herein. In general, when treatments are performed in multiple replicates, the data are presented as the average of the replicate treatments.

The concentration of antisense oligonucleotide used varies from cell line to cell line. Methods to determine the optimal antisense oligonucleotide concentration for a particular cell line are well known in the art. Antisense oligonucleotides are typically used at concentrations ranging from 1 nM to 300 nM.

RNA Isolation

RNA analysis can be performed on total cellular RNA or poly(A)+ mRNA. Methods of RNA isolation are well known in the art. RNA is prepared using methods well known in the art, for example, using the TRIZOL® Reagent (Invitrogen, Carlsbad, Calif.) according to the manufacturer's recommended protocols.

Analysis of Inhibition of Target Levels or Expression

Inhibition of levels or expression of an FGFR4 nucleic acid can be assayed in a variety of ways known in the art. For example, target nucleic acid levels can be quantitated by, e.g., Northern blot analysis, competitive polymerase chain reaction (PCR), or quantitaive real-time PCR. RNA analysis can be performed on total cellular RNA or poly(A)+ mRNA. Methods of RNA isolation are well known in the art. Northern blot analysis is also routine in the art. Quantitative real-time PCR can be conveniently accomplished using the commercially available ABI PRISM® 7600, 7700, or 7900 Sequence Detection System, available from PE-Applied Biosystems, Foster City, Calif. and used according to manufacturer's instructions.

Quantitative Real-Time PCR Analysis of Target RNA Levels

Quantitation of target RNA levels may be accomplished by quantitative real-time PCR using the ABI PRISM® 7600, 7700, or 7900 Sequence Detection System (PE-Applied Biosystems, Foster City, Calif.) according to manufacturer's instructions. Methods of quantitative real-time PCR are well known in the art.

Prior to real-time PCR, the isolated RNA is subjected to a reverse transcriptase (RT) reaction, which produces complementary DNA (cDNA) that is then used as the substrate for the real-time PCR amplification. The RT and real-time PCR reactions are performed sequentially in the same sample well. RT and real-time PCR reagents are obtained from Invitrogen (Carlsbad, Calif.). RT, real-time-PCR reactions are carried out by methods well known to those skilled in the art.

Gene (or RNA) target quantities obtained by real time PCR are normalized using either the expression level of a gene whose expression is constant, such as GAPDH, or by quantifying total RNA using RIBOGREEN® (Invetrogen, Inc. Carlsbad, Calif.). GAPDH expression is quantified by real time PCR, by being run simultaneously with the target, multiplexing, or separately. Total RNA is quantified using RIBOGREEN® RNA quantification reagent (Invetrogen, Inc. Eugene, Oreg.). Methods of RNA quantification by RIBOGREEN® are taught in Jones, L. J., et al, (Analytical Biochemistry, 1998, 265, 368-374). A CYTOFLUOR® 4000 instrument (PE Applied Biosystems) is used to measure RIBOGREEN® fluorescence.

Probes and primers are designed to hybridize to an mDICT nucleic acid. Methods for designing real-time PCR probes and primers are well known in the art, and may include the use of software such as PRIMER EXPRESS® Software (Applied Biosystems, Foster City, Calif.).

Analysis of Protein Levels

Antisense inhibition of FGFR4 nucleic acids can be assessed by measuring FGFR4 protein levels. Protein levels of FGFR4 can be evaluated or quantitated in a variety of ways well known in the art, such as immunoprecipitation, Western blot analysis (immunoblotting), enzyme-linked immunosorbent assay (ELISA), quantitative protein assays, protein activity assays (for example, caspase activity assays), immunohistochemistry, immunocytochemistry or fluorescence-activated cell sorting (FACS). Antibodies directed to a target can be identified and obtained from a variety of sources, such as the MSRS catalog of antibodies (Aerie Corporation, Birmingham, Mich.), or can be prepared via conventional monoclonal or polyclonal antibody generation methods well known in the art. Antibodies useful for the detection of human and rat FGFR4 are commercially available.

In Vivo Testing of Antisense Compounds

Antisense compounds, for example, antisense oligonucleotides, are tested in animals to assess their ability to inhibit expression of FGFR4 and produce phenotypic changes, such as decreases in body weight. Testing may be performed in normal animals, or in experimental disease models. For administration to animals, antisense oligonucleotides are formulated in a pharmaceutically acceptable diluent, such as phosphate-buffered saline. Administration includes parenteral routes of administration, such as intraperitoneal, intravenous, and subcutaneous. Calculation of antisense oligonucleotide dosage and dosing frequency is within the abilities of those skilled in the art, and depends upon factors such as route of administration and animal body weight. Following a period of treatment with antisense oligonucleotides, RNA is isolated from various tissues and changes in FGFR4 nucleic acid expression are measured. Changes in FGFR4 protein levels may also be measured.

Animal Models of Obesity Non-Limiting Disclosure and Incorporation by Reference

The following examples serve only to illustrate the methods, antisense oligonucleotides, and compositions provided and are not intended to limit the same. Each of the references, GENBANK® accession numbers, and the like recited in the present application is incorporated herein by reference in its entirety. By incorporation of GENBANK® Accession Nos., associated sequence and structural data pertaining to such sequences including gene organization and structural elements that may be found in sequence databases such as the National Center for Biotechnology Information (NCBI) by searching such GENBANK® Accession Nos. are incorporated herein by reference in their entirety.

EXAMPLES Example 1 Antisense Inhibition of Mus musculus FGFR4: Primary Hepatocytes

Antisense oligonucleotides targeted to a FGFR4 nucleic acid were tested for their effects on) FGFR4 mRNA expression in vitro. Cultured primary hepatocytes plated in a 96-well plate were treated with 60 nM of antisense oligonucleotide. Transfection was carried out using Cytofectin™ (Genlantis, San Diego, Calif.). After a treatment period of approximately 24 hours, RNA was isolated from the cells and FGFR4 mRNA levels were measured by quantitative real-time PCR, as described herein using the primer/probe set shown in Table 4. Probes and primers to mouse FGFR4 were designed to hybridize to a mouse FGFR4 sequence, using published sequence information (GenBank® accession number BC033313.1 incorporated herein as SEQ ID NO: 10).

TABLE 4 Gene Target-specific mouse Primers and Probes for Use in Real-Time PCR Target SEQ Target Seq ID Sequence ID Name Species No Description Sequence (5′ to 3′) Length NO mFGFR4 Mouse 10 Forward CCTTATGCCCCCATCTCAG 19 167 Primer mFGFR4 Mouse 10 Reverse TCCCAAGGCCTCTAGGTTG 19 168 Primer mFGFR4 Mouse 10 Probe CTCTCCGGGACTAGCTGCAA 50 169 AACTTATGCTCTAAACATTT CTAGTTCCCC

The FGFR4 mRNA levels were adjusted according to total RNA content as measured by RIBOGREEN®. Results are presented as percent inhibition of FGFR4, relative to untreated control cells. Antisense oligonucleotides that exhibited at least 30% inhibition of FGFR4 expression are shown in Table 5.

The oligonucleotides of Table 5, have a 5-10-52′-MOE gapmer motif. The heading “5′ target site” indicates the 5′-most nucleotide corresponding to the first base to which the antisense oligonucleotide is targeted on the indicated GENBANK® Accession No.

All antisense compounds in Table 5 are gapmers having 20 linked nucleobases and composed of a central “gap” segment consisting of 2′-deoxynucleotides, which are flanked on both sides (5′ and 3′ directions) by wing segments having 2′-modifications. The wings are composed of 2′-methoxyethyl (2′-MOE) nucleotides. The internucleoside (backbone) linkages are phosphorothioate (P=S) throughout the oligonucleotide. All cytosine nucleobases are 5-methylcytosines.

TABLE 5 Inhibition of Gene Target mRNA Levels by Chimeric Oligonucleotides  with 2′-MOE Wings and Deoxy Gap (mus musculus) Target 5′ 3′ SEQ SEQ ID Target Target % ID ISIS #  NO Site Site Sequence (5′ to 3′) Inhibition NO 393247 10   228   247 GGGCTGGCACACTCACCCGC 91 15 393248 10   238   257 GATCCCGGCAGGGCTGGCAC 87 16 393249 10   244   263 GGTCACGATCCCGGCAGGGC 83 17 393250 10   337   356 GCCACATTTCCTTCCAGCTG 95 18 393251 10   346   365 CCAAGAGCAGCCACATTTCC 68 19 393252 10   355   374 TCAACAGGGCCAAGAGCAGC 71 20 393253 10   402   421 TTCCTCAGAGGCCTCAAGGG 88 21 393254 10   600   619 AGGAAGGAAGCTGGCGATCT 59 22 393255 10   610   629 CAGCATCCTCAGGAAGGAAG 52 23 393256 10   635   654 CCACGGGCCAGGCAGAGGTA 93 24 393257 10   644   663 GTCATGGAGCCACGGGCCAG 87 25 393258 10   682   701 AGGAGTCATCCATAAGCAAC 79 26 393259 10   687   706 GGTTAAGGAGTCATCCATAA 85 27 393260 10   694   713 TGATGGAGGTTAAGGAGTCA 75 28 393261 10   773   792 TGTGTCCAGTAGGGTGCTTG 72 29 393262 10   873   892 CCAGTGGATGGTAGGCATGG 97 30 393263 10   878   897 TTGAGCCAGTGGATGGTAGG 87 31 393264 10   996  1015 AAGGCATGTGTATGTGCCAC 57 32 393265 10  1001  1020 TCCACAAGGCATGTGTATGT 79 33 393266 10  1020  1039 AATGCTACCCAGAGAGTTCT 80 34 393267 10  1048  1067 CCAGCACATCCAGGAGATAG 61 35 299029 10  1200  1219 GCTGCTGCCGTTGATGACGA 95 36 393268 10  1245  1264 TGTTGTCTTCAGGACTTGTA 74 37 393269 10  1364  1383 AGCCACGCTGACTGGTAGGA 85 38 299036 10  1380  1399 CTCTGGCAGCACCGTGAGCC 90 39 393270 10  1446  1465 TGATACATACAGGATGATAT 37 40 393271 10  1466  1485 ACAAGCAGAACCAGTGAGCC 64 41 393272 10  1471  1490 GGAGCACAAGCAGAACCAGT 74 42 393273 10  1490  1509 TACACCCCGGCCAGCAGCAG 74 43 393274 10  1604  1623 GACTTGCCAGAGGACCTCGA 88 44 393275 10  1615  1634 GGGACAAACTTGACTTGCCA 79 45 393276 10  1625  1644 CCTCGCACCAGGGACAAACT 62 46 393277 10  1670  1689 ACAAGGCCCGTGAGCAAGGG 64 47 393278 10  1756  1775 CAAAGCAGCCCTCACCCAGG 50 48 393279 10  1775  1794 TCTGCACGAACCACTTGCCC 79 49 393280 10  1796  1815 GAGGGATCCATACCAAAGGC 93 50 393281 10  1850  1869 GAGGCATTGTCTTTCAGCAT 77 51 393282 10  1870  1889 GGTCTGCCAAATCCTTGTCG 86 52 393283 10  1910  1929 TGTCTTCCGATTAGCTTCAT 61 53 393284 10  1939  1958 AGACACCCAGCAGGTTGATG 56 54 393285 10  1945  1964 GAGTGCAGACACCCAGCAGG 76 55 393286 10  1956  1975 GGGCCCTTCCTGAGTGCAGA 72 56 393287 10  2048  2067 CCATCAGGGCTGAGATCAGG 70 57 322160 10  2131  2150 CCAGATACTGCATGCCTCGG 88 58 393288 10  2150  2169 TGGATGCACTTCCGAGACTC 61 59 393289 10  2380  2399 CCCCGAGGGTGAAGATTTCC 73 60 393290 10  2440  2459 TGTGCCCCTCTCGCAGCAGT 81 61 393291 10  2490  2509 CCTCATTAGCCCATACAGCT 44 62 393292 10  2555  2574 TTGTCCAGAGCTTCCACCAG 65 63 299052 10  2567  2586 GCCAGCAGGACCTTGTCCAG 85 64 393293 10  2580  2599 CTCTTCAGAGACAGCCAGCA 54 65 393294 10  2600  2619 GTCAGGCGGAGGTCAAGGTA 75 66 393295 10  2616  2635 AGAAAAGGGTCCAAAGGTCA 75 67 393296 10  2628  2647 CCCATTGGAGGGAGAAAAGG 65 68 393297 10  2635  2654 TGGCATCCCCATTGGAGGGA 83 69 393298 10  2641  2660 TGCTGCTGGCATCCCCATTG 87 70 393299 10  2880  2899 CAGGGCCAGAGAGAGGATCT 90 71 393300 10  2935  2954 TGGAACAGAAGGCCTCAACT 80 72 393301 10  2994  3013 CCAAGGGCAAGGCCATGATC 76 73 393302 10  3000  3019 ATGAGTCCAAGGGCAAGGCC 80 74 393303 10  3005  3024 TGAGGATGAGTCCAAGGGCA 83 75 393304 10  3085  3104 TAGAGCATAAGTTTTGCAGC 79 76 393305 10  3090  3109 ATGTTTAGAGCATAAGTTTT 51 77 393306 10  3095  3114 TAGAAATGTTTAGAGCATAA 72 78 393307 10  3120  3139 AGGCCTCTAGGTTGTTTGGG 79 79 393308 10  3277  3296 TTTATAAAAATGCCATGTTC 61 80 393310 14  3566  3585 TTCCATGCCCAGTTTGGGAC 74 81 393311 14  4800  4819 GGAGTCATTGATACCCATAG 80 82 393312 14  6049  6068 GTCAGAGTGGAGGCAGGTTA 77 83 393313 14  7448  7467 TTGATTCCCAGCAAATACAT 49 84 393314 14  7805  7824 ACCCAGCACATCCAGGAGAT 68 85 393315 14  8295  8314 CCCCACAAATGTTGCACCCA 73 86 393316 14 10349 10368 GCCCAGGTTGCCATGTGTAC 84 87 393317 14 12504 12523 GGTTTTGTTATGCATTAGAG 80 88 393318 14 14115 14134 GATCAGGAAGCATAGAAGGA 66 89 393319 14 15655 15674 GACAGTGGTGTGAGTAGTAT 50 90 393320 14 16387 16406 GAACAGGTCAAAGAGGTTTG 54 91

Antisense oligonucleotides with the following Isis Nos. exhibited at least 75% inhibition of FGFR4 mRNA levels: 299029, 299036, 299052, 322160, 393247, 393248, 393249, 393250, 393253, 393256, 393257, 393258, 393259, 393260, 393262, 393263, 393265, 393266, 393269, 393274, 393275, 393279, 393280, 393281, 393282, 393285, 393290, 393294, 393295, 393297, 393298, 393299, 393300, 393301, 393302, 393303, 393304, 393307, 393311, 393312, 393316, and 393317. The target segments to which these antisense oligonucleotides are targeted are active target segments. The target regions to which these antisense oligonucleotides are targeted are active target regions.

Antisense oligonucleotides with the following Isis Nos. exhibited at least 80% inhibition of FGFR4 mRNA levels: 299029, 299036, 299052, 322160, 393247, 393248, 393249, 393250, 393253, 393256, 393257, 393259, 393262, 393263, 393266, 393269, 393274, 393280, 393282, 393290, 393297, 393298, 393299, 393300, 393302, 393303, 393311, 393316, and 393317. The target segments to which these antisense oligonucleotides are targeted are active target segments. The target regions to which these antisense oligonucleotides are targeted are active target regions.

Antisense oligonucleotides with the following Isis Nos. exhibited at least 85% inhibition of FGFR4 mRNA levels: 299029, 299036, 299052, 322160, 393247, 393248, 393250, 393253, 393256, 393257, 393259, 393262, 393263, 393269, 393274, 393280, 393282, 393298, and 393299. The target segments to which these antisense oligonucleotides are targeted are active target segments. The target regions to which these antisense oligonucleotides are targeted are active target regions.

Antisense oligonucleotides with the following Isis Nos. exhibited at least 90% inhibition of FGFR4 mRNA levels: 299036, 299029, 393247, 393250, 393256, 393262, 393280, and 393299. The target segments to which these antisense oligonucleotides are targeted are active target segments. The target regions to which these antisense oligonucleotides are targeted are active target regions

Antisense oligonucleotides with the following Isis Nos. exhibited at least 95% inhibition of FGFR4 mRNA levels: 299029, 393250, and 393262. The target segments to which these antisense oligonucleotides are targeted are active target segments. The target regions to which these antisense oligonucleotides are targeted are active target regions.

Example 2 Antisense Inhibition of Human FGFR4: A459 Cells

Antisense oligonucleotides targeted to a FGFR4 nucleic acid were tested for their effects on FGFR4 mRNA expression in vitro. Cultured A459 Cells in a 96-well plate were treated with 160 nM of antisense oligonucleotide. Transfection was carried out using Cytofectin™ (Genlantis, San Diego, Calif.). After a treatment period of approximately 24 hours, RNA was isolated from the cells and FGFR4 mRNA levels were measured by quantitative real-time PCR, as described herein using the primer/probe set shown in Table 6. Probes and primers to human FGFR4 were designed to hybridize to a human FGFR4 sequence, using published sequence information (GenBank® accession number NM_(—)002011.3, incorporated herein as SEQ ID NO: 5).

TABLE 6 Gene Target-specific human Primers and Probes for Use in Real-Time PCR Target SEQ Target SEQ ID Sequence ID Name Species  NO Description Sequence (5′ to 3′) Length NO FGFR4 Human 5 Forward GTTCTGCTCGGCTTCTTGG 19 170 Primer FGFR4 Human 5 Reverse AGGCTTCCAGCTTCTCTGG 19 171 Primer FGFR4 Human 5 Probe GGCTGAGCCTGGCTGGAGAG 50 172 CTGCTATGCTAAACCTCCTGC CTCCCAATA

The FGFR4 mRNA levels were adjusted according to total RNA content as measured by RIBOGREEN®. Results are presented as percent inhibition of FGFR4, relative to untreated control cells. Antisense oligonucleotides that exhibited inhibition of human FGFR4 expression are shown in Table 7.

The oligonucleotides of Table 7, have a 5-10-52′-MOE gapmer motif. The heading “5′ target site” indicates the 5′-most nucleotide corresponding to the first base to which the antisense oligonucleotide is targeted on the indicated GENBANK® Accession No.

All antisense compounds in Table 7 are gapmers having 20 linked nucleobases and composed of a central “gap” segment consisting of 2′-deoxynucleotides, which are flanked on both sides (5′ and 3′ directions) by wing segments having 2′-modifications. The wings are composed of 2′-methoxyethyl (2′-MOE) nucleotides. The internucleoside (backbone) linkages are phosphorothioate (P=S) throughout the oligonucleotide. All cytosine nucleobases are 5-methylcytosines.

TABLE 7 Inhibition of Gene Target mRNA Levels by Chimeric Oligonucleotides  with 2′-MOE Wings and Deoxy Gap (human) Target 5′ 3′ SEQ SEQ ID Target Target % ID ISIS #  NO Site Site Sequence (5′ to 3′) Inhibition NO 299069 2   455   474 CAGCGGGACACAAGTCCTTG 52  92 299067 3    46    65 AACTGCCTTCCTCGAGCCTG 59  93 299065 4   306   325 GTCAAGGAGTCAAGCTCCAC  2  94 299066 4   891   910 GGTAGAGGGATGTCAACCAG  5  95 299003 5    26    45 GGCAGGGTCCGCAGACAGCC 60  96 299004 5   160   179 CAGCAGCCGCATCTCCTTCT 86  97 299005 5   192   211 GGCACACTCAGCAGGACCCC 80  98 299006 5   208   227 CAAGACTGGAGGCCCAGGCA 82  99 299007 5   254   273 GAGCCAGGCAGGGCTCAAGC 47 100 299008 5   278   297 CCTGCTCTTGCTGCTCCAGG 76 101 299009 5   289   308 TACTGTCAGCTCCTGCTCTT 75 102 299010 5   304   323 AGGCTGCCCAAGGGCTACTG 73 103 299012 5   354   373 TCCTTGTACCAGTGGCCACC 83 104 299013 5   380   399 GGCCAGCAGGTGCCAGGCGA 64 105 299014 5   412   431 AATCTCTAGGCGGCCCCTCC 79 106 299015 5   475   494 GACGATCATGGAGCCTCGTG 80 107 299016 5   483   502 TTCTGCAGGACGATCATGGA 63 108 299017 5   529   548 ATCATCGTTGCTGGAGGTCA 84 109 299018 5   597   616 GTCCAGTAGGGTGCTTGCTG 69 110 299019 5   602   621 GGTGTGTCCAGTAGGGTGCT 67 111 299020 5   627   646 TGCAGTTTCTTCTCCATGCG 69 112 299021 5   711   730 CCATCCTTAAGCCAGCGGAT 37 113 299022 5   727   746 CCCATGAAAGGCCTGTCCAT 82 114 299023 5   739   758 AATGCGGTTCTCCCCATGAA 55 115 299024 5   757   776 GCGCAGCCGAATGCCTCCAA 81 116 299025 5   785   804 TCTCCATCACGAGACTCCAG 76 117 299026 5   833   852 CGTTCTCTACCAGGCAGGTG 79 118 299027 5   964   983 CTTGCACAGCAGCTCCACGT 84 119 299028 5   969   988 TACACCTTGCACAGCAGCTC 79 120 299029 5  1027  1046 GCTGCTGCCGTTGATGACGA 69  36 299030 5  1032  1051 CCGAAGCTGCTGCCGTTGAT 81 121 299031 5  1076  1095 TGTCTGCAGTCTTTAGGACT 65 122 299032 5  1090  1109 CTCTGAGCTATTGATGTCTG 69 123 299033 5  1095  1114 TCCACCTCTGAGCTATTGAT 65 124 299034 5  1121  1140 CTGACACGTTCCGCAGGTAC 71 125 299035 5  1181  1200 ACTGGTAGGAGAGGCCGATG 57 126 299036 5  1207  1226 CTCTGGCAGCACCGTGAGCC 81  39 299037 5  1235  1254 GCGCTGCTGCGGTCCATGTG 61 127 299038 5  1326  1345 TGCCCTCGATACAGCCCGGC 86 128 299039 5  1428  1447 TTGCCGGAAGAGCCTGACTC 72 129 299040 5  1447  1466 TACCAGGGATGAGCTTGACT 84 130 299041 5  1452  1471 CCTCGTACCAGGGATGAGCT 85 131 299042 5  1555  1574 AAGCACCAGCCTGTCCCGGG 76 132 299043 5  1607  1626 AGGCCTCTGCACGTACTACC 89 133 299044 5  1656  1675 TTGACGGCCACAGTGCTGGC 78 134 299045 5  1741  1760 CTTGTGTCGGCCGATCAGCT 53 135 299046 5  1772  1791 GGGTGCAGACACCAAGCAGG 86 136 299047 5  1919  1938 AGACCAGGACTGGGAAGGAG 86 137 299048 5  1968  1987 TTCCGGGACTCCAGATACTG 61 138 299049 5  1979  1998 GGTGGATACACTTCCGGGAC 48 139 299050 5  2268  2287 CGATGTCCCTCCCGCAGCAG 66 140 299051 5  2313  2332 ATCAGCCCGTACAGCTCTGG 77 141 299052 5  2394  2413 GCCAGCAGGACCTTGTCCAG 74  64 299053 5  2416  2435 GTCGAGGTACTCCTCAGAGA 62 142 299054 5  2481  2500 CTGGAGGAGCAGGTGCTGCT  5 143 299055 5  2497  2516 GCTGAAGACAGAATCGCTGG 86 144 299056 5  2503  2522 GTCGTGGCTGAAGACAGAAT 71 145 299057 5  2557  2576 TCATGTCTGCACCCCAGACC 83 146 299058 5  2565  2584 AGCCTTGCTCATGTCTGCAC 81 147 299059 5  2629  2648 TGTGTCAGGCTGTGGCTGAG 64 148 299060 5  2698  2717 AAGGGCACGGCCCTTGGACA 57 149 299061 5  2738  2757 ATTTGGGCCATCAGGACACA 81 150 299062 5  2752  2771 AGCAGAACCCTGACATTTGG 88 151 299063 5  2851  2870 CCTGCTGGTATTGGGAGGCA 78 152 299011 6   308   327 ACAGCACAGCCGCACAGGCT 66 153 298992 6  1204  1223 CGCCCAGTACCTGGCAGCAC 11 154 299064 8   423   442 GGAGCGAGGAATGTACCCGC 52 155 299003 8   460   479 GGCAGGGTCCGCAGACAGCC 60  96 298994 8   583   602 TCCGGCTCACCTCGAGCCTG 17 156 298995 8  1913  1932 GGAAACATCCTCTCCCTCGG 55 157 299004 8  3110  3129 CAGCAGCCGCATCTCCTTCT 86  97 299005 8  3142  3161 GGCACACTCAGCAGGACCCC 80  98 299006 8  3158  3177 CAAGACTGGAGGCCCAGGCA 82  99 298996 8  3199  3218 GAAGCCATACCAAGCTCCAC 47 158 299008 8  3924  3943 CCTGCTCTTGCTGCTCCAGG 76 101 299009 8  3935  3954 TACTGTCAGCTCCTGCTCTT 75 102 299010 8  3950  3969 AGGCTGCCCAAGGGCTACTG 73 103 299012 8  4000  4019 TCCTTGTACCAGTGGCCACC 83 104 299013 8  4026  4045 GGCCAGCAGGTGCCAGGCGA 64 105 299014 8  4058  4077 AATCTCTAGGCGGCCCCTCC 79 106 299015 8  4121  4140 GACGATCATGGAGCCTCGTG 80 107 299016 8  4129  4148 TTCTGCAGGACGATCATGGA 63 108 299068 8  4174  4193 TTCACTCCCTGCTAGAGTCT 80 159 298997 8  4250  4269 GTCAAGGAGTCTACATCAGG 67 160 299017 8  4266  4285 ATCATCGTTGCTGGAGGTCA 84 109 299019 8  4451  4470 GGTGTGTCCAGTAGGGTGCT 67 111 299020 8  4476  4495 TGCAGTTTCTTCTCCATGCG 69 112 299021 8  4560  4579 CCATCCTTAAGCCAGCGGAT 37 113 299022 8  4576  4595 CCCATGAAAGGCCTGTCCAT 82 114 299023 8  4588  4607 AATGCGGTTCTCCCCATGAA 55 115 299025 8  5214  5233 TCTCCATCACGAGACTCCAG 76 117 299026 8  5262  5281 CGTTCTCTACCAGGCAGGTG 79 118 299027 8  5905  5924 CTTGCACAGCAGCTCCACGT 84 119 299028 8  5910  5929 TACACCTTGCACAGCAGCTC 79 120 299029 8  5968  5987 GCTGCTGCCGTTGATGACGA 69  36 299030 8  5973  5992 CCGAAGCTGCTGCCGTTGAT 81 121 299032 8  6165  6184 CTCTGAGCTATTGATGTCTG 69 123 299033 8  6170  6189 TCCACCTCTGAGCTATTGAT 65 124 299034 8  6196  6215 CTGACACGTTCCGCAGGTAC 71 125 299035 8  6256  6275 ACTGGTAGGAGAGGCCGATG 57 126 299037 8  6663  6682 GCGCTGCTGCGGTCCATGTG 61 127 299038 8  6754  6773 TGCCCTCGATACAGCCCGGC 86 128 298993 8  6868  6887 AGTCAGGCTGTCACATGTGA 48 161 299039 8  6930  6949 TTGCCGGAAGAGCCTGACTC 72 129 299040 8  6949  6968 TACCAGGGATGAGCTTGACT 84 130 299041 8  6954  6973 CCTCGTACCAGGGATGAGCT 85 131 299043 8  7211  7230 AGGCCTCTGCACGTACTACC 89 133 299044 8  7260  7279 TTGACGGCCACAGTGCTGGC 78 134 298998 8  7654  7673 GTGAGCCCCTTCTATTAGTC 34 162 298999 8  8267  8286 AATGTGCATTTCTCAATCCC 70 163 299045 8  8899  8918 CTTGTGTCGGCCGATCAGCT 53 135 299046 8  8930  8949 GGGTGCAGACACCAAGCAGG 86 136 299000 8  8971  8990 AACGGCCCGTGCAGCCAGCC 71 164 299047 8  9169  9188 AGACCAGGACTGGGAAGGAG 86 137 299048 8  9218  9237 TTCCGGGACTCCAGATACTG 61 138 299001 8  9863  9882 CAGGACTCACACGTCACTCT  0 165 299050 8 10204 10223 CGATGTCCCTCCCGCAGCAG 66 140 299002 8 10797 10816 CAGCCCGTACCTGCGAGAGG 55 166 299052 8 10880 10899 GCCAGCAGGACCTTGTCCAG 74  64 299054 8 11096 11115 CTGGAGGAGCAGGTGCTGCT  5 143 299055 8 11112 11131 GCTGAAGACAGAATCGCTGG 86 144 299056 8 11118 11137 GTCGTGGCTGAAGACAGAAT 71 145 299057 8 11172 11191 TCATGTCTGCACCCCAGACC 83 146 299058 8 11180 11199 AGCCTTGCTCATGTCTGCAC 81 147 299059 8 11244 11263 TGTGTCAGGCTGTGGCTGAG 64 148 299060 8 11313 11332 AAGGGCACGGCCCTTGGACA 57 149 299061 8 11353 11372 ATTTGGGCCATCAGGACACA 81 150 299062 8 11367 11386 AGCAGAACCCTGACATTTGG 88 151 299063 8 11466 11485 CCTGCTGGTATTGGGAGGCA 78 152

Antisense oligonucleotides with the following Isis Nos. exhibited at least 75% inhibition of FGFR4 mRNA levels: 299004, 299005, 299006, 299008, 299009, 299012, 299014, 299015, 299017, 299022, 299024, 299025, 299026, 299027, 299028, 299030, 299036, 299038, 299040, 299041, 299042, 299043, 299044, 299046, 299047, 299051, 299055, 299057, 299058, 299061, 299062, 299063, and 299068. The target segments to which these antisense oligonucleotides are targeted are active target segments. The target regions to which these antisense oligonucleotides are targeted are active target regions.

Antisense oligonucleotides with the following Isis Nos. exhibited at least 80% inhibition of FGFR4 mRNA levels: 299004, 299005, 299006, 299012, 299015, 299017, 299022, 299024, 299027, 299030, 299036, 299038, 299040, 299041, 299043, 299046, 299047, 299055, 299057, 299058, 299061, 299062, and 299068. The target segments to which these antisense oligonucleotides are targeted are active target segments. The target regions to which these antisense oligonucleotides are targeted are active target regions.

Antisense oligonucleotides with the following Isis Nos. exhibited at least 85% inhibition of FGFR4 mRNA levels: 299004, 299038, 299041, 299043, 299046, 299047, 299055, and 299062. The target segments to which these antisense oligonucleotides are targeted are active target segments. The target regions to which these antisense oligonucleotides are targeted are active target regions.

Example 3 Mus Musculus FGFR4Cross-Species Reactivity

The antisense compounds in Table 5 were designed to target different regions of the mouse FGFR4 RNA but have complementarity across species. Specifically, certain of the antisense compounds in table 5 are cross-reactive with rat mRNA. These include ISIS No's 299052, 322160, 393247, 393248, 393249, 393250, 393253, 393254, 393255, 393256, 393257, 393266, 393268, 393269, 393273, 393274, 393275, 393276, 393277, 393278, 393279, 393281, 393282, 393283, 393285, 393286, 393287, 393288, 393289, 393290, 393291, 393292, 393293, 393294, 393298, 393299, 393300, 393303, and 393307. Certain of the antisense compounds in Table 5 are cross-reactive with human FGFR4 sequences. Mouse FGFR4 antisense compounds that are cross reactive with human FGFR4 sequences are listed in Table 8.

TABLE 8 Mus Musculus Cross- species reactivity Target 5′ SEQ ID Target SEQ ID Isis # NO Site Mismatches Sequence (5′ to 3′)  NO 393253 5   229 1 TTCCTCAGAGGCCTCAAGGG 21 393254 5   427 2 AGGAAGGAAGCTGGCGATCT 22 393255 5   437 1 CAGCATCCTCAGGAAGGAAG 23 393256 5   462 2 CCACGGGCCAGGCAGAGGTA 24 393260 5   521 2 TGATGGAGGTTAAGGAGTCA 28 393261 5   600 0 TGTGTCCAGTAGGGTGCTTG 29 393269 5  1191 2 AGCCACGCTGACTGGTAGGA 38 393273 5  1317 1 TACACCCCGGCCAGCAGCAG 43 393278 5  1583 2 CAAAGCAGCCCTCACCCAGG 48 393281 5  1677 2 GAGGCATTGTCTTTCAGCAT 51 393284 5  1766 1 AGACACCCAGCAGGTTGATG 54 393285 5  1772 2 GAGTGCAGACACCCAGCAGG 55 393286 5  1783 1 GGGCCCTTCCTGAGTGCAGA 56 322160 5  1958 0 CCAGATACTGCATGCCTCGG 58 393288 5  1977 2 TGGATGCACTTCCGAGACTC 59 393289 5  2207 1 CCCCGAGGGTGAAGATTTCC 60 393292 5  2382 2 TTGTCCAGAGCTTCCACCAG 63 393293 5  2407 2 CTCTTCAGAGACAGCCAGCA 65 393294 5  2427 1 GTCAGGCGGAGGTCAAGGTA 66 393253 8  3179 1 TTCCTCAGAGGCCTCAAGGG 21 393254 8  4073 2 AGGAAGGAAGCTGGCGATCT 22 393255 8  4083 1 CAGCATCCTCAGGAAGGAAG 23 393256 8  4108 2 CCACGGGCCAGGCAGAGGTA 24 393261 8  4449 1 TGTGTCCAGTAGGGTGCTTG 29 393269 8  6266 2 AGCCACGCTGACTGGTAGGA 38 393273 8  6745 1 TACACCCCGGCCAGCAGCAG 43 393278 8  7187 2 CAAAGCAGCCCTCACCCAGG 48 393284 8  8924 1 AGACACCCAGCAGGTTGATG 54 393285 8  8930 2 GAGTGCAGACACCCAGCAGG 55 322160 8  9208 0 CCAGATACTGCATGCCTCGG 58 393289 8 10143 1 CCCCGAGGGTGAAGATTTCC 60 393292 8 10868 2 TTGTCCAGAGCTTCCACCAG 63 393293 8 10893 2 CTCTTCAGAGACAGCCAGCA 65 393294 8 11042 1 GTCAGGCGGAGGTCAAGGTA 66

In Vivo Pharmacology (Prevention Study)

Example 4 Antisense Inhibition of FGFR4Levels In Vivo Studies in a Diet-Induced Model of Obesity (Prevention Study)

The C57BL/6 mouse strain is reported to be susceptible to weight gain when fed a high-fat diet. Accordingly, these mice (8 weeks old) were fed a high-fat diet for 14 days prior to administration of FGFR4 antisense oligonucleotides. They were then used in the following studies to evaluate the effects of FGFR4 antisense oligonucleotides on mRNA expression in liver and fat tissues in a diet-induced model of obesity.

Male C57BL/6 mice at 8 weeks of age were placed on a high-fat diet containing 58% calories from fat (Research Diet D12492, Research Diets Inc., New Brunswick, N.J.) 14 days prior to the initial dosing administration. The mice were divided into three treatment groups. One group received subcutaneous injections of ISIS 393250 (SEQ ID NO: 18) at a dose of 25 mg/kg twice per week for 12 weeks. The second group received subcutaneous injections of ISIS 141923, CCTTCCCTGAAGGTTCCTCC (SEQ ID NO: 173), at a dose of 25 mg/kg twice per week for 12 weeks. Oligonucleotides were dissolved in 0.9% saline for injection. A group of mice fed normal chow also received subcutaneous injections of saline twice weekly for 12 weeks. The saline-injected group fed the high-fat diet served as the control group to which the oligonucleotide-treated groups were compared.

After the 12 week treatment period, the mice were sacrificed and FGFR4 mRNA levels were evaluated in liver, brown adipose tissue (BAT) and white adipose tissue (WAT). mRNA levels were quantitated by real-time PCR as described in other examples herein. The results are presented in Table 9 and are expressed as percent inhibition relative to saline-treated mice receiving a high fat diet.

TABLE 9 Antisense inhibition of FGFR4 mRNA expression in liver and fat tissues (Prevention study) % Inhibition of FGFR4 mRNAs Brown White ISIS # Liver Fat tissue Fat tissue Saline-58% HF 0 0 0 FGFR4 393250 −68.9 −56.65 −69.57

FGFR4 antisense oligonucleotide treatment, but not control antisense oligonucleotide treatment, reduced FGFR4 mRNA levels by ˜69%, 57% and 70% in liver, brown adipose tissue and white adipose tissue, respectively. The data demonstrate that FGFR4 antisense oligonucleotide treatment can effectively reduce target mRNA levels in liver, brown adipose tissue and white adipose tissue.

Example 5 Effects of Antisense Inhibition of FGFR4 with ISIS 393250 on Body Weight (Prevention Study)

Male C57BL/6J mice (age 10 weeks at time 0) were fed 58% high-fat diet for 14 days and were then divided into matched groups (n=6) based on body weight and body composition, and treated by subcutaneous injections twice a week with saline, ISIS 141923 (SEQ ID NO: 173, a control oligonucleotide) or ISIS 393250 (SEQ ID NO: 18, FGFR4 antisense oligonucleotide). The mice were treated at a dose of 25 mg/kg twice a week of ISIS 141923 or ISIS 393250, or saline, twice a week. A group of mice fed normal chow also received subcutaneous injections of saline twice weekly as normal controls. Treatment was continued for 12 weeks. At the end of the study, mice were sacrificed and tissues where collected and weighed. The results are presented in Table 10.

TABLE 10 Antisense inhibition of FGFR4 on total body weight in Diet-induced Obese mice (Prevention study) Body Weight (g) Mean Weeks: 0 1 2 3 4 5 6 7 8 9 10 11 12 Saline 26.1 27.8 29.0 30.0 31.2 32.1 32.4 33.2 34.2 35.5 35.5 36.6 36.5 141923- Control 26.1 27.7 29.9 30.2 31.3 32.3 32.1 32.3 33.1 33.2 32.9 33.6 34.0 393250 - FGFR4 26.3 27.7 28.6 29.3 30.0 30.1 30.2 29.9 30.3 30.4 29.9 30.4 30.4 Chow-saline 23.9 24.2 24.8 25.3 25.7 25.9 25.7 26.0 26.8 26.8 26.5 27.3 27.5

Treatment of C57BL/6J mice with ISIS 393250 (SEQ ID NO: 18) resulted in a decrease in body weight gain, with animals gaining an average of 4.1 grams while saline treated controls gained 10.4 grams. Animals treated with the control oligonucleotide gained an average of 7.9 grams of body weight.

Saline-chow littermate animals gained 3.6 grams of body weight compared to a gain of 10.4 grams for the saline high-fat fed controls.

There was no appreciable change in food intake among the treatment groups.

Example 6 Effects of Antisense Inhibition of FGFR4 with ISIS 393250 on Body Fat Content (Prevention Study)

Male C57BL/6J mice (age 10 weeks at time 0) were divided into matched groups (n=6) based on body weight and body composition, and treated by subcutaneous injections twice a week with saline, ISIS 141923, (SEQ ID NO: 173, a control oligonucleotide) or ISIS 393250 (SEQ ID NO: 18, FGFR4 antisense oligonucleotide). The mice were treated at a dose of 25 mg/kg twice a week of ISIS 141923 or 25 mg/kg ISIS 393250, or with volume of saline. A group of mice fed normal chow also received subcutaneous injections of saline twice weekly. Treatment was continued for 12 weeks. Body fat content was measured at weeks 0, 6, 9.5 and 11. The results are presented in Table 11 and 12.

TABLE 11 Antisense inhibition of FGFR4 on total body fat content (g) (Prevention study) Body fat content (g) weeks: mean 0 6 9.5 11 saline 4.66 8.93 11.20 11.93 141923 - 4.55 7.69 8.15 8.21 Control 393250 - 4.28 5.25 4.91 4.67 FGFR4 chow-saline 3.16 3.35 3.54

The mice on the high fat diet treated with ISIS 393250 (SEQ ID NO: 18) showed no increase in body fat content (maintained body fat at a constant level), starting at 4.28 g at week 0 and ending at 4.67 g at week 11. Saline treated animals on the high fat diet showed a significant increase in body fat content starting at 4.66 g at week 0 and ending at 11.93 g at week 11. The mice on the high fat diet treated with the control antisense oligonucleotide, ISIS 141923, demonstrated a similar increase in body fat content to that in the saline treated mice, starting at 4.55 g at week 0 and ending at 8.21 g at week 11. The lean body mass remained relatively unchanged. The mice on the chow diet showed no significant change in body fat content starting at 3.16 g at week 6 and ending at 3.54 g at week 11.

TABLE 12 Antisense inhibition of FGFR4 on total body fat content (%) Percentage body fat content (%) weeks: mean 0 6 9.5 11 saline 17.7 27.1 31.0 32.0 141923- 17.3 23.6 24.0 23.8 Control 393250- 16.1 17.3 16.1 15.3 FGFR4 chow-saline 12.2 12.6 12.9

Mice on the high fat diet treated with ISIS 393250 showed a decrease in percent body fat content starting at 16.1% at week 0 and ending at 15.3% at week 11. Saline treated animals on the high fat diet showed a significant increase in percent body fat content starting at 17.7% at week 0 and ending at 32.0% at week 11. Mice on the high fat diets treated with the control ASO, ISIS 141923, demonstrated an increase in percent body fat content starting at 17.3% at week 0 and ending at 23.8% at week 11. Mice on the chow diet showed no significant change body fat content starting at 12.2% at week 6 and ending at 12.9% at week 11.

In Vivo Pharmacology (Reversal Study) Example 7 Antisense Inhibition of FGFR4 Levels: In Vivo Studies in a Diet-Induced Model of Obesity (Reversal Study)

The C57BL/6 mouse strain is reported to be susceptible to weight gain when fed a high-fat diet. Accordingly, these mice were fed a high-fat diet for 3 months and then used in the following studies to evaluate the effects of FGFR4 antisense oligonucleotides on mRNA expression in liver and fat tissues in a diet-induced model of obesity.

Male C57BL/6 mice at 4 weeks of age were placed on a high-fat diet containing 58% calories from fat (Research Diet D12492, Research Diets Inc., New Brunswick, N.J.) for 3 months. The mice were divided into three treatment groups. One group received subcutaneous injections of ISIS 393250 (SEQ ID NO: 18) at a dose of 25 mg/kg twice per week for 9.5 weeks. The second group received subcutaneous injections of ISIS 141923 (SEQ ID NO: 173) at a dose of 25 mg/kg twice per week for 9.5 weeks. Oligonucleotides were dissolved in 0.9% saline for injection. The third group of mice received subcutaneous injections of saline twice weekly for 9.5 weeks. The saline-injected group served as the control group to which the oligonucleotide-treated groups were compared.

After the 9.5 week treatment period, the mice were sacrificed and FGFR4 mRNA levels were evaluated in liver, brown adipose tissue (BAT) and white adipose tissue (WAT). mRNA expression levels were quantitated by real-time PCR as described in other examples herein. The results are presented in Table 13 and are expressed as percent inhibition relative to saline-treated mice receiving a high fat diet.

TABLE 13 Antisense inhibition of FGFR4 mRNA expression in liver and fat tissues (Reversal study) % Inhibition of FGFR4 mRNA Brown White ISIS # Liver Fat tissue Fat tissue Saline-58% HF 0 0 0 FGFR4 393250 −77.6 −69.2 −44.5 Control 141923 −7.7 −18.2 −11.2

FGFR4 antisense oligonucleotide treatment, but not control antisense oligonucleotide treatment, reduced FGFR4 mRNA levels by ˜80%, 70% and 45% in liver, brown adipose tissue and white adipose tissue, respectively. The data demonstrate that FGFR4 antisense oligonucleotide treatment can effectively inhibit target mRNA expression in liver, brown adipose tissue and white adipose tissue.

Example 8 Effects of Antisense Inhibition of FGFR4 with ISIS 393250 on Body Weight (Reversal Study)

Male C57BL/6J mice, 4 weeks of age, were placed on a high-fat diet containing 58% calories from fat (Research Diet D12492, Research Diets Inc., New Brunswick, N.J.) for 3 months. The mice were divided into three groups (n=6) with the same starting average blood glucose levels, body weight, and body composition and treated by subcutaneous injection twice a week with saline, ISIS 141923 (the control oligonucleotide) or ISIS 393250. The mice were treated at a dose of 25 mg/kg of ISIS 141923 or ISIS 393250, or similar volume of saline. Treatment was continued for 9.5 weeks. At day 84 mice were sacrificed and the tissues were collected and weighed. The results are presented in Table 14.

TABLE 14 Effect of Antisense inhibition of FGFR4 gene expression on total body weight in Diet-induced Obese mice (Reversal study) Body weight (g) mean Weeks: 0 1 2 3 4 5 6 7 8 9 saline 39.7 40.7 41.1 40.9 39.7 39.9 40.4 40.2 40.4 40.1 141923- 41.3 43.2 43.8 43.4 41.7 41.7 41.2 40.4 39.9 38.8 control 393250- 40.8 42.6 42.9 42.5 40.7 40.1 39.3 37.4 36.6 35.2 FGFR4

Treatment of C57BL/6J mice with ISIS 393250 resulted in a decrease in body weight, with animals losing an average of 5.6 grams while saline treated controls remained relatively unchanged (gained 0.4 grams). Animals treated with the control oligonucleotide lost an average of 2.5 grams of body weight.

Therefore, FGFR4 antisense oligonucleotide treatment lowered body weight by ˜10% (35.2±0.7 vs. 40.1±1.8 g in saline group; P<0.05), but it did not change lean body mass.

Example 9 Effects of Antisense Inhibition of FGFR4 with ISIS 393250 on Body Fat Content (Reversal Study)

Male C57BL/6J mice (4 weeks of age weeks at time 0) were fed a 58% high-fat diet for 3 months and then divided into matched groups (n=6) with the same average blood glucose levels, body weight, and body composition, and treated by subcutaneous injections twice a week with saline, or 25 mg/kg twice a week of ISIS 141923 or ISIS 393250. Treatment was continued for 9.5 weeks. Body fat content was measured at weeks 0, 3.5, 7.5 and 9.5. The results are presented in Table 15 and 16.

TABLE 15 Antisense inhibition of FGFR4 on total body fat content (g) (Reversal study) Whole body fat content (g) Weeks: mean 0 3.5 7.5 9.5 saline 14.63 15.74 15.60 15.26 141923-control 14.94 16.38 14.14 12.15 393250-FGFR4 14.81 14.86 10.88 8.21

The mice on the high fat diet treated with ISIS 393250 showed a significant decrease in body fat content, starting at 14.81 g at week 0 and ending at 8.21 g at week 9.5. Saline treated animals on the high fat diet showed no decrease in body fat content starting at 14.63 g at week 0 and ending at 15.26 g at week 9.5. The mice on the high fat diet treated with the control ASO, ISIS 141923, demonstrated a slight decrease in body fat content, starting at 14.94 g at week 0 and ending at 12.15 at week 9.5.

FGFR4 antisense oligonucleotide treatment lowered epididymal fat pad weight by ˜40% (1.41±0.06 vs. 2.37±0.15 g in saline group; P<0.001), peri-renal fat pad weight by ˜62% (0.40±0.03 vs. 1.06±0.09 g in saline group; P<0.001) and whole body fat content by ˜44% (8.21±0.55 vs. 15.25±1.12 g in saline group; P<0.001), but did not change lean body mass.

TABLE 16 Effect of Antisense inhibition of FGFR4 on total body fat content (%) (Reversal study) fat/BW (%) Weeks: mean 0 3.5 7.5 9.5 saline 36.5 37.7 37.9 37.0 141923- 36.1 37.1 34.5 30.9 control 393250- 36.1 34.6 29.1 23.0 FGFR4 Mice on the high fat diet treated with ISIS 393250 showed a decrease in body fat content starting at 36.1% at week 0 and ending at 23% at week 9.5. Saline treated animals showed no decrease in body fat content starting at 36.5% at week 0 and ending at 37.0% at week 9.5. Mice on the high fat diet treated with the control antisense oligonucleotide, ISIS 141923, demonstrated a slight decrease in body fat content starting at 36.1% at week 0 and ending at 30.9% at week 9.5. FGFR4 antisense oligonucleotide treated animals demonstrated a significant decrease in body fat content after 9.5 weeks showing almost a 13% reduction.

Example 10 Effects of Antisense Inhibition of FGFR4 with ISIS 393250 on Blood Glucose Levels (Reversal Study)

A glucose tolerance test in medical practice is the administration of glucose to determine how quickly it is cleared from the blood and is used to test for diabetes. Blood was obtained from the Diet Induced Obese (DIO) C57BL/6J mice and analyzed for glucose concentration. The results are shown in Table 17, illustrating changes in fasting plasma glucose levels at Week 6. For the Insulin Tolerance Test (ITT), food was withdrawn at 9:15 am and ITT was started from 1:30 pm. The Insulin dose was 0.5 U/kg. For the Intraperitoneal Glucose Treatment test (IPGTT), mice were fasted overnight and IPGTT was started from 8:30 am. The Glucose dose was 1.00 g/kg. The results are shown in Tables 18.

TABLE 17 IPGTT to determine glucose tolerance at Week 6 in DIO mice (Reversal study) Glucose mg/dL mean ISIS # 0 mins 20 mins 40 mins 70 mins 100 mins 130 mins saline 112.5 292.4 359.8 249.1 205.8 166.3 141923- 96.0 244.4 265.0 173.5 136.3 117.3 control 393250- 109.3 222.0 184.6 138.3 135.3 119.1 FGFR4

In response to glucose challenge, animals treated with ISIS 393250 show improved glucose tolerance. Peak plasma glucose level at the 30 minute time point was decreased by over 50% from the saline treated control and the subsequent drop in glucose was enhanced compared to controls, indicating that inhibition of FGFR4 by antisense improved glucose tolerance. The results indicated that glucose was cleared much more quickly from the blood of mice treated with ISIS 393250 relative to the control groups. This indicates that inhibition of FGFR4 by antisense may increase glucose tolerance and, therefore, may be useful for treating, preventing and/or ameliorating disorders of or associated with glucose intolerance and/or insulin resistance, such as, obesity, metabolic syndrome, diabetes, and hyperglycemia. See also FIG. 3.

TABLE 18 ITT to determine insulin sensitivity at Week 5.5 in DIO Mice (Reversal study) Glucose mg/dL mean ISIS # 0 mins 30 mins 60 mins 90 mins 120 mins saline 128.1 95.3 85.1 115.6 134.1 141923- 119.6 87.4 91.4 109.4 133.3 control 393250- 116.9 74.8 71.1 96.3 126.3 FGFR4 An insulin tolerance test was also completed. There was an increase in rate and magnitude of glucose lowering after injecting insulin in the animals treated with ISIS 393250. Glucose levels are reduced during ITT in mice treated with ISIS 393250 compared to saline treated control, indicating an increase in insulin sensitivity. See also FIG. 2.

Example 11 Effects of Antisense Inhibition of FGFR4 with ISIS 393250 on Metabolic Rate (Reversal Study)

Male C57BL/6J mice were subjected to measurements of metabolic rates at the 8 week time point by known methods. The metabolic rate (as measured by oxygen consumption rate, VO2-ml/hr/kg) was measured in both light and dark phases as shown in Table 19.

TABLE 19 Metabolic rates VO2 (ml/hr/kg) at Week 8 Metabolic rate - (VO2-ml/hr/kg) at week 8 mean dark light Saline 3082.8 2686.0 141923-control 3090.4 2709.7 393250-FGFR4 3459.3 2865.0

As shown in Table 19, treatment with ISIS 393250 caused an increase in the metabolic rate in both light and dark phases compared to either the saline treated or ISIS 141923 treated controls. The data indicate that the mice treated with ISIS 393250 had a higher metabolic rate than the mice of the control groups. Specifically, ISIS 393250 increased metabolic rate by about 11% (dark) and 7% (Light) at 8 weeks compared to saline treated controls, while the respiratory quotient remained relatively unchanged (See FIG. 1). This indicates that ISIS 393250 may be useful for increasing metabolic rates and, in turn, reducing body weight and body fat. For the animals treated with ISIS 393250 in this example, a reduction in body weight and body fat (data shown in Examples 7 and 8) can be seen at 7.5 weeks of treatment. The compounds provided herein are therefore useful in the treatment, prevent and/or amelioration of obesity, metabolic syndrome and related disorders.

Example 12 Effects of Antisense Inhibition of FGFR4 with ISIS 393250 on Adipose Tissue Weight (Reversal Study)

Male C57BL/6J mice were subjected to measurement of tissue weight by known methods. The tissue weight of epididymal white adipose tissue (epiWAT), perirenal white adipose tissue (periWAT), and brown adipose tissue (BAT) were measured, as shown in Table 20.

TABLE 20 Tissue weight (g) Tissue wt (g): Mean epididymal peri-renal WAT WAT BAT saline 2.37 1.06 0.22 141923- 1.93 0.74 0.20 control 393250- 1.41 0.40 0.17 FGFR4

The data indicate that the antisense oligonucleotides are effective at reducing adipose tissue weight. The tissue weight of epididymal white adipose tissue (epiWAT), perirenal white adipose tissue (periWAT), and brown adipose tissue (BAT) were all lowered with the treatment of Isis 393250-FGFR4 antisense oligonucleotide compared to the saline counterpart within each adipose tissue type. The epididymal white adipose tissue (epiWAT) weight treated with Isis 393250-FGFR4 antisense oligonucleotide was decreased by ˜40% compared to the saline treated control group. The peri-renal white adipose tissue (periWAT) weight treated with Isis 393250-FGFR4 antisense oligonucleotide was decreased by ˜62% compared to the saline treated control group. The brown adipose tissue (BAT) weight treated with Isis 393250-FGFR4 antisense oligonucleotide was decreased by ˜23% compared to the saline treated control group.

Example 13 Effects of Antisense Inhibition of FGFR4 with ISIS 393250 on Differentiation and Proliferation and Cell Size in White Adipose Tissue (Reversal Study)

Obesity is characterized by an excess of subcutaneous fat in proportion to lean body mass. In obesity, adipose tissue, as opposed to most tissues in the body, will continue to grow. Growth of the adipose tissue results from both the enlargement of mature adipocytes and the formation of new adipocytes from adipocyte precursor cells (preadipocytes). Thus, fat accumulation is associated with increase in the size (hypertrophy) as well as the number (hyperplasia) of adipose tissue cells.

As indicated by the description of fat accumulation above, the lowered body fat content is partially due to a decrease in adipocyte size (see FIG. 4). ISIS 393250 caused a reduction in white adipose tissue cell size compared to the saline and ISIS 141923 treated white adipose tissue, indicating a potential effect on adipocyte proliferation or differentiation.

Example 14 Dose Response Antisense Inhibition of Human FGFR4 in A549 Cells, Primer Probe Set RTS1325

Several antisense oligonucleotides exhibiting at least 80% in vitro inhibition of FGFR4 were tested at various doses in A549 cells. Cells were plated at densities of 5500 cells per well and treated with nM concentrations of antisense oligonucleotide as indicated in Table 21. After a treatment period of approximately 24 hours, RNA was isolated from the cells and FGFR4 mRNA levels were measured by quantitative real-time PCR, as described herein. Human FGFR4 primer probe set RTS1325 was used to measure mRNA levels. FGFR4 mRNA levels were adjusted according to total RNA content as measured by RIBOGREEN®. Results are presented as percent inhibition of FGFR4, relative to untreated control cells. As illustrated in Table 21, FGFR4 mRNA levels were reduced in a dose-dependent manner.

TABLE 21 Antisense Inhibition of human FGFR4 in A549 cells, Primer Probe Set RTS1325 ISIS No 2.4 nM 4.7 nM 9.4 nM 18.8 nM 37.5 nM 75.0 nM 150.0 nM 300.0 nM 299043 6 5 28 28 48 63 68 76 299062 8 40 44 53 78 84 94 97 299004 8 33 48 71 84 95 96 95 299038 6 35 34 42 73 84 87 85 299046 13 34 35 40 60 79 81 78 299055 11 19 37 52 71 88 91 92 299047 20 31 42 56 62 81 86 83 141923 33 14 8 5 0 3 8 18 (control) 

1-139. (canceled)
 140. A compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides, wherein the linked nucleosides comprise at least 8 contiguous nucleobases of a sequence recited in SEQ ID NOs: 15-166.
 141. The compound of claim 140, wherein the modified oligonucleotide consists of 18 to 24 linked nucleosides.
 142. The compound of claim 140, wherein the modified oligonucleotide consisting of 19 to 22 linked nucleosides.
 143. A compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides and having a nucleobase sequence comprising a portion which consists of at least 8 contiguous nucleobases and which is complementary to an equal-length portion of (3′ UTR) 2577-3027, (5′UTR) 12-167, (start codon) 168-170, (Coding Sequence) 168-2576, (exon2) 115-258, (exon3) 259-522, (exon4) 523-603, (exon5) 604-770, (exon6) 771-894, (exon7) 895-1085, (exon8) 1086-1224, (exon9) 1225-1418, (exon10) 1419-1564, (exon11) 1565-1696, (exon12) 1687-1797, (exon13) 1798-1988, (exon14) 1989-2111, (exon15) 2112-2182, (exon16) 2183-2320, (exon17) 2321-2426, (exon18) 2427-3026, or nucleotides 160-227, 254-273, 278-373, 380-399, 475-494, 475-502, 529-548, 597-646, 711-776, 785-988, 1027-1051, 1076-1109, 1095-1114, 1121-1226, 1235-1345, 1555-1675, 1326-1675, 1741-1760, 1772-1791, 1919-1938, 1968-1987, 1979-1998, 1968-1998, 2268-2287, 2313-2332, 2394-2413, 2416-2435, 2481-2500, or 2497-2584 of SEQ ID NO:
 5. 144. A compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides and having a nucleobase sequence comprising a portion which consists of at least 8 contiguous nucleobases and which is complementary to an equal-length portion of (3′ UTR) 11192-111642, (start codon) 3118-3120, (exon1) 379-548, (exon1a) 538-592, (exon2) 3065-3208, (exon3) 3905-4168, (exon4) 4260-4340, (exon4a) 4260-4611, (exon5) 4453-4619, (exon6) 5200-5323, (exon7) 5836-6026, (exon8) 6161-6299, (exon9) 6653-6846, (exon10a) 6847-7066, (exon10) 6291-7066, (exon11) 7169-7290, (exon12) 8845-8955, (exon13) 9048-9238, (exon14) 9572-9694, (exon15) 9802-9872, (exon16) 10119-10256, (exon17) 10807-10912, (exon18) 11042-11641, (intron1) 549-3064, (intron1a) 593-3064, (intron2) 3209-3904, (intron3) 4169-4259, (intron4) 4941-4452, (intron5) 4620-5199, (intron6) 5324-5835, (intron7) 6027-6160, (intron8) 6300-6652, (intron9) 6847-6920, (intron10) 7067-7168, (intron11) 7291-8844, (intron12) 8956-9047, (intron13) 9239-9571, (intron14) 9695-9801, (intron15) 9873-10118, (intron16) 10257-10806, (intron17) 10913-11041, or nucleotides, 423-442, 583-602, 1913-1932 3142-3161, 3158-3177, 3924-3969, 4000-4019, 4026-4045, 4000-4045, 4058-4285, 4451-4470, 4476-4495, 4560-4607, 5214-5281, 5905-5987, 5910-5992, 6165-6189, 6170-6215, 6256-6275, 6663-6682, 6754-6773, 6868-6887, 6930-6973, 7211-7279, 7654-7673, 8267-8286, 8899-8948, 8899-9188, 9169-9237, 9863-9882, 10204-10233, 10797-10816, 10797-10899, 11096-11137, 11096-11199, 11244-11265, 11313-11332, 11353-11372, or 11353-11485 of SEQ ID NO: 8, and wherein the nucleobase sequence of the modified oligonucleotide is at least 90% complementary to SEQ ID NO:
 8. 145. The compound of claim 140, wherein the modified oligonucleotide is a single-stranded oligonucleotide.
 146. The compound of claim 140, wherein the nucleobase sequence of the modified oligonucleotide is at least 90% complementary to SEQ ID NO
 1. 147. The compound of claim 140, wherein the nucleobase sequence of the modified oligonucleotide is at least 95% complementary to SEQ ID NO
 1. 148. The compound of claim 140, wherein the nucleobase sequence of the modified oligonucleotide is 100% complementary to SEQ ID NO
 1. 149. The compound of claim 140, wherein at least one internucleoside linkage is a modified internucleoside linkage.
 150. The compound of claim 149, wherein each internucleoside linkage is a phosphorothioate internucleoside linkage.
 151. The compound of claim 140, wherein at least one nucleoside of the modified oligonucleotide comprises a modified sugar.
 152. The compound of claim 151, wherein the at least one modified sugar is a bicyclic sugar.
 153. The compound of claim 152, wherein a east one modified sugar comprises a 2′O-methoxyethyl.
 154. The compound of claim 140, wherein at least one nucleoside comprises a modified nucleobase.
 155. The compound of claim 154, wherein the modified nucleobase is a 5-methylcytosine.
 156. The compound of claim 151, wherein the modified oligonucleotide comprises: a gap segment consisting of linked deoxynucleosides; a 5′ wing segment consisting of linked nucleosides. a 3′ wing segment consisting of linked nucleosides; wherein the gap segment is positioned between the 5′ wing segment and the 3′ wing segment and wherein each nucleoside of each wing segment comprises a modified sugar.
 157. The compound of claim 156, wherein the modified oligonucleotide comprises: a gap segment consisting of ten linked deoxynucleosides; a 5′ wing segment consisting of five linked nucleosides; a 3′ wing segment consisting of five linked nucleosides; wherein the gap segment is positioned between the 5′ wing segment and the 3′ wing segment, wherein each nucleoside of each wing segment comprises a 2′-O-methoxyethyl sugar; and wherein each internucleoside linkage is a phosphorothioate linkage.
 158. The compound of claim 140, wherein the modified oligonucleotide consists of 20 linked nucleosides.
 159. The compound of claim 140, consisting of a single-stranded modified oligonucleotide.
 160. The compound of claim 140, wherein the nucleobase sequence of the modified oligonucleotide is 100% complementary to a nucleic acid sequence encoding human fibroblast growth factor receptor 4 selected from among the nucleic acid sequences recited in SEQ ID NOs: 1-8.
 161. A method comprising administering to an animal the compound or composition of any of claim 140, 143 or
 144. 162. The method of claim 161, wherein the animal is a human.
 163. The method of claim 162 wherein administering the compound slows progression and/or ameliorates diabetes, obesity or metabolic syndrome.
 164. The method of claim 163, wherein diabetes is Type 2 diabetes.
 165. The method of claim 161, comprising co-administering the compound and an anti-obesity agent, glucose-lowering agent, or anti-psychotic agent.
 166. The method of claim 165, wherein the compound and an anti-obesity agent, glucose-lowering agent, or anti-psychotic agent are administered concomitantly.
 167. The method of claim 161, wherein the administering is parenteral administration.
 168. A method comprising administering to a human with diabetes, obesity or metabolic syndrome a therapeutically effective amount of a composition comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides and having a nucleobase sequence comprising at least 8 contiguous nucleobases of a nucleobase sequence selected from among the nucleobase sequences recited in SEQ ID NOs: 15-166.
 169. A method comprising administering to a human with diabetes, obesity or metabolic syndrome a therapeutically effective amount of a the compound or composition of any of claim 140, 143 or
 144. 170. The method of claim 169, wherein administering results in a reduction of obesity, body weight, body fat content, glucose, insulin resistance or an increase in metabolic rate or insulin sensitivity or any combination thereof.
 171. The method of claim 170, wherein the reduction in body fat content is a reduction in adipocyte size or adipocyte proliferation or a combination thereof.
 172. The method of claim 171, comprising co-administering the compound and an anti-obesity agent, glucose-lowering agent, or anti-psychotic agent.
 173. The method of claim 172, wherein the anti-obesity agent, glucose-lowering agent, or anti-psychotic agent is a therapeutic lifestyle change.
 174. The method of claim 169, wherein administering the compound slows progression and/or ameliorates obesity, diabetes, or metabolic syndrome.
 175. The method of claim 169, wherein administering results in a reduction of obesity, body weight, body fat content, glucose, insulin resistance or an increase in metabolic rate or insulin sensitivity or any combination thereof.
 176. The method of claim 175, wherein the reduction in body fat content is a reduction in adipocyte size or adipocyte proliferation or a combination thereof. 